View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15105_high_10 (Length: 385)
Name: NF15105_high_10
Description: NF15105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15105_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 7 - 285
Target Start/End: Original strand, 35344549 - 35344826
Alignment:
| Q |
7 |
cttagagaggtcaatattccattcatcctctgatgtttcaatcgcagtaacctttcctccacggtgatcaaaatattttgacttgtggctgaatctcatc |
106 |
Q |
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| T |
35344549 |
cttagagaggtcaatattccatttatcctcagatgtttcaatcgcagtaacctttcctccacggtgctttgagttcttcgacttgtcattcaatctcatc |
35344648 |
T |
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| Q |
107 |
gatgaaaggtgcttaactgctgttgccatattggtgctgctaagcgatgaaagagcctattccaaacaatttttaagagtgcaacaaaagagcctatata |
206 |
Q |
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| T |
35344649 |
gatgaaaggtgcttaactgctgttgccatattggtgctgctaaacgatgaaaaagcctattccaagcaatttttaagagtgtaacaaaagagcctatata |
35344748 |
T |
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| Q |
207 |
ttggtatttttccgaaacaaacttcccnnnnnnncctctaattatgaaacaacctctcttttctctctcaggaaacaac |
285 |
Q |
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| T |
35344749 |
ttggtatttttccgaaacaaacttccc-ttttttcctctaattacgaaacaacctttcttatttctctcaggaaacaac |
35344826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 62
Target Start/End: Complemental strand, 35361407 - 35361352
Alignment:
| Q |
7 |
cttagagaggtcaatattccattcatcctctgatgtttcaatcgcagtaacctttc |
62 |
Q |
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| T |
35361407 |
cttagagaggtcaatattccatttatcctcagatgtttcaatcgcagtaacctttc |
35361352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 98 - 194
Target Start/End: Complemental strand, 35361331 - 35361234
Alignment:
| Q |
98 |
aatctcatcgatgaaaggtgcttaactgctgttgccatattggtgctgctaagcgatgaaagagcctattccaaacaatttttaa-gagtgcaacaaa |
194 |
Q |
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|||||||||||||||| |||| ||| |||| ||||||| |||||| ||| | | |||||| || |||||||||||||||||||| |||||||||||| |
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| T |
35361331 |
aatctcatcgatgaaaagtgcctaattgctattgccatgctggtgccgctcaacaatgaaaaagtctattccaaacaatttttaaggagtgcaacaaa |
35361234 |
T |
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