View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15105_high_15 (Length: 294)
Name: NF15105_high_15
Description: NF15105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15105_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 43619211 - 43619480
Alignment:
| Q |
13 |
aatatcaatgtcattggaatcttttcccagaagctacacacaaaaaatcgatagccaaatgatttattaacnnnnnnngaaagtaacggaacaatgaatg |
112 |
Q |
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| T |
43619211 |
aatatcaatgtcatttgaatcttttcccagaagctacacacaaaaaatcgatagccaaatgatttattaacaaaaaaagaaagtatcggaacaatgaatg |
43619310 |
T |
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| Q |
113 |
agggaaaaagaatgattccaacgattggaatttgtacaaaccttatcgcgaacccaaccaccggcgactcggatgtcagttttgagtttgaagtgaagtt |
212 |
Q |
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| T |
43619311 |
agggaaaaagaatgattccaacgattgtaatttgtacaaaccttatcgcgaacccaaccaccggcgactcggatgtcagttttgagtttgaagtgaagtt |
43619410 |
T |
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| Q |
213 |
gagtggcgagaagtctatcgaagattttttgctcgacttcggtgagttcgattgtgtcacgaaaatggtg |
282 |
Q |
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| T |
43619411 |
gagtggcgagaagtctatcgaagattttttgttcgacttcggtgagttcgattgtgtcacgaacatggtg |
43619480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 43650353 - 43650471
Alignment:
| Q |
119 |
aaagaatgattccaacgattggaatttgtacaaaccttatcgcgaacccaaccaccggcgactcggatgtcagttttgagtttgaagtgaagttgagtgg |
218 |
Q |
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| T |
43650353 |
aaagaatgattcgaacaattgaaatttgcacaaaccttatctcgaacccagccaccggcgatacggagctgagtttggagttgaaagtgacggagagtgg |
43650452 |
T |
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| Q |
219 |
cgagaagtctatcgaagat |
237 |
Q |
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| T |
43650453 |
cgagaagcctatcgaagat |
43650471 |
T |
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