View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15105_high_16 (Length: 293)
Name: NF15105_high_16
Description: NF15105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15105_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 163 - 278
Target Start/End: Original strand, 49170756 - 49170871
Alignment:
| Q |
163 |
ggcgtatcacaaccaagacaacccactccaccatttcacagaacaacaacaaccaacctccgatcctcaccactctttccaaactgcacctaactggctc |
262 |
Q |
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| T |
49170756 |
ggcgtatcacaaccaagacaacccactccaccatttcacagaacaacaacaaccaacctccgatcctcaccactctttccaaactgcacctaactggctc |
49170855 |
T |
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| Q |
263 |
aacaacgcccttcttc |
278 |
Q |
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| T |
49170856 |
aacaacgcccttcttc |
49170871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 49170609 - 49170732
Alignment:
| Q |
20 |
ttcacttcacagttcacaccacacactagtatcaactcataacactctctcttccctccnnnnnnnctccatttctttctctctattatccacacctaac |
119 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
49170609 |
ttcacttcacagttcacaccacacactagtaccaactcataacactctctcttccctcctttttttctccatttctttctctctattatccacacccaac |
49170708 |
T |
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| Q |
120 |
ttttccttcaccatgaatcaatag |
143 |
Q |
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|||||||||||||||||||||||| |
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| T |
49170709 |
ttttccttcaccatgaatcaatag |
49170732 |
T |
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