View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15105_high_2 (Length: 633)

Name: NF15105_high_2
Description: NF15105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15105_high_2
NF15105_high_2
[»] chr6 (2 HSPs)
chr6 (20-622)||(19751232-19751836)
chr6 (500-616)||(1820277-1820390)


Alignment Details
Target: chr6 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 20 - 622
Target Start/End: Complemental strand, 19751836 - 19751232
Alignment:
Q  20 ttgtaacacatttgttctctatttaagggatgtaatcgcttgatgtaaatctatatttgtacttgttctaagacaatttctattttggttcgagcaggtt 119  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19751836 ttgttacacatttgttctctatttaagggatgtaatcgcttgatgtaaatctatatttgtacttgttctaagacaatttctattttggttcgagcaggtt 19751737  T
Q  120 ttgggagtatctgcagcttttggttttcacttcaagcagattcctagtgtgtagtatagtatcgacttcttgattaggagattattattcttcagcagc- 218  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||     
T  19751736 ttgggagtatctgcagcttttggttttcacgtcaagcagattcctagtgtgtagtatagtatcgacttcttgattgggagattattattgttcagcagcg 19751637  T
Q  219 --agcagcaattattctcggacattaaccaaattatttaatgttggttgggatattttttcatgtatagcagtgaattctcaccatgtttgtcaacgagg 316  Q
      ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19751636 gcagcagcaattattctcggacattaaccaaattatttagtgttggttgggatattttttcatgcatagcagtgaattctcaccatgtttgtcaacgagg 19751537  T
Q  317 gatatggtttcaggttctgttttgtgggaggttgaggaattactttgaattttgtggtgattggtgttaaacctgcaaaactgtaactcggtattagtta 416  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19751536 gatatggtttcaggttctgttttgtaggaggttgaggaattactttgaattttgtggtgattgttgttaaacctgcaaaactgtaactcggtattagtta 19751437  T
Q  417 acttgagcattaagctacactattactatagtgtatcgtacataaagtgagtaatctaaccatatagtagttagtgccagctgttaattggtaggaagat 516  Q
    |||||||| || |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19751436 acttgagc-tttagctacactattactatagtgtatggtacatagagtgagtaatctaaccatatagtagttagtgccagctgttaattggtaggaagat 19751338  T
Q  517 ctaatagctagttagaacaatgacttctaaatatagatgaaatgtaacaaactcgacacaattcgataaacagttttcattatctcagatttcttcttct 616  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19751337 ctaatagctagttagaacaatgacttctatatatagatgaaatgtaacaaactcgacacaattcgataaacagttttcattttctcagatttcttcttct 19751238  T
Q  617 tcccta 622  Q
    ||||||    
T  19751237 tcccta 19751232  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 500 - 616
Target Start/End: Complemental strand, 1820390 - 1820277
Alignment:
Q  500 ttaattggtaggaagatctaatagctagttagaacaatgacttctaaatatagatgaaatgtaacaaactcgacacaattcgataaacagttttcattat 599  Q
    ||||||||| |||||||||||  | |||||||||| ||   ||||| |||||||| ||  ||||||||||| ||||||||||||||||| |||| ||| |    
T  1820390 ttaattggttggaagatctaa--gttagttagaactataggttctatatatagatcaaccgtaacaaactcaacacaattcgataaaca-ttttaatttt 1820294  T
Q  600 ctcagatttcttcttct 616  Q
    || ||||||||||||||    
T  1820293 ctgagatttcttcttct 1820277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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