View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15105_high_3 (Length: 601)
Name: NF15105_high_3
Description: NF15105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15105_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 13 - 586
Target Start/End: Original strand, 41640068 - 41640640
Alignment:
| Q |
13 |
taggcaagaattttcattcaacttaaccaaatcaaaggcaaccataaaaactttgaattgtaaatggatgattatgtccacataaaattgaaaagaaaaa |
112 |
Q |
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| T |
41640068 |
taggcaagaagtttcattcaacttaaccaaatcaaaggcaaccataaaaactttgaattgtaaatggatgattatgtccacataaaattgaaaagaaaaa |
41640167 |
T |
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| Q |
113 |
attgagcaaatattcatttgtttcttaattgtgtgaggcattgtcagtctgtcactaatgtatctctgattatatcaaaattacaataacattttcaagt |
212 |
Q |
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| T |
41640168 |
attgagcaaatattcatttgtttcttaattgtgtgaggcattgtcagtctgtcactaatgtatctctgattatatgaaaattacaataacattttcaagt |
41640267 |
T |
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| Q |
213 |
atgtttttgctaataattttttggccaaattgattcatgaaactcacatttgaagatcaaacttactagcgaaaacacattcgataacacaagacgtgtt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41640268 |
atgtttttgctaataattttttggccaaattgattcatgaaactcacatttgaagatcaaacttactagcgaaaacacgttcgataacacaagacgtgtt |
41640367 |
T |
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| Q |
313 |
taagtatgtttttacaattttgataaattcagactatggtgacagcttctcacacatttaagggtcaaaatgactactaactcgaaaataaaatactatg |
412 |
Q |
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| T |
41640368 |
tgagtatgtttttacaattttgataaattcagactatggcgacagcttctcacacatttaagggtcaaaatgactactaactcgaaaataaaatactatg |
41640467 |
T |
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| Q |
413 |
aactactaaccaagactgtgtgaaggcccaaggatttgcctgtctgtatattgcggatactgtcatcaaagaacaactgcaaaaagcaaagtaaataaat |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41640468 |
aactactaaccaagactgtgtgaaggcccaaggatttgcctgtctgtatattgcggatactgtcatcaaagaacaactgcaaaaagcaaagtaaataaat |
41640567 |
T |
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| Q |
513 |
aaaataatttgatgatctgactagatagcacataatcaaaaatatgctcataacaaaaatcttactgttctttg |
586 |
Q |
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| T |
41640568 |
-acataatttgatgatctgactagatagcacataatcaaaaatatgctcataacaaaaatcttactgttctttg |
41640640 |
T |
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Back To:
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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 502
Target Start/End: Complemental strand, 24019642 - 24019592
Alignment:
| Q |
452 |
ctgtctgtatattgcggatactgtcatcaaagaacaactgcaaaaagcaaa |
502 |
Q |
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| T |
24019642 |
ctgtctgtaaattgcggatactgtcatcgaagaacaactgaaaagagcaaa |
24019592 |
T |
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