View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15105_high_6 (Length: 476)

Name: NF15105_high_6
Description: NF15105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15105_high_6
NF15105_high_6
[»] chr7 (4 HSPs)
chr7 (7-379)||(18226172-18226547)
chr7 (29-164)||(18226526-18226660)
chr7 (199-258)||(8745871-8745930)
chr7 (201-256)||(41243214-41243269)
[»] chr4 (4 HSPs)
chr4 (194-288)||(19680324-19680418)
chr4 (201-232)||(23564560-23564591)
chr4 (194-264)||(2346413-2346483)
chr4 (199-232)||(44019609-44019642)
[»] chr5 (2 HSPs)
chr5 (201-288)||(8402134-8402221)
chr5 (201-282)||(8402005-8402086)
[»] chr3 (7 HSPs)
chr3 (194-258)||(30135506-30135570)
chr3 (194-258)||(30141635-30141699)
chr3 (194-258)||(30145057-30145121)
chr3 (194-229)||(30134110-30134145)
chr3 (201-232)||(50196933-50196964)
chr3 (201-286)||(30130793-30130878)
chr3 (201-289)||(11047474-11047562)
[»] chr8 (1 HSPs)
chr8 (201-229)||(42160477-42160505)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 379
Target Start/End: Complemental strand, 18226547 - 18226172
Alignment:
Q  7 tcgaagaatatatactcgtaaaatttttaaaattgaatattaaactaaacgaattgatctcattttatattttgataataaaaatgtaggcttacggtgt 106  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  18226547 tcgaaaaatatatactcgtaaaatttaaaaaattgaatattaaactaaacgaattgatctcattttatattttgatgataaaaatgtaggcttacggtgc 18226448  T
Q  107 aattcttcaatccaaagaagtgaaaatcttagaactcagaaaaatatatactcataaataaaattacat---ccttcacttaaaagaactaatatgcttg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||   ||||||||||||||||||||||||||||    
T  18226447 aattcttcaatccaaagaagtgaaaatcttagaactcagaaaaatatatactcgtaaataaaattacatttaccttcacttaaaagaactaatatgcttg 18226348  T
Q  204 gatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttatacaatcgacatcccaaaaacctgagcgatgtgggcctgg-tttaagtc 302  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||    
T  18226347 gatctcattccaaaagttagctcaaaggaggaggagactcaattatatttatacaatcgacatcccgaaaacctgagagatgtgggcctggttttaagtc 18226248  T
Q  303 caaaattctaccattgatannnnnnnnncttattaaaaatgatttactatatatcaagcgaggtactatttttcttt 379  Q
    |||||||||||||||||||         |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18226247 caaaattctaccattgata-ttttttttcttattaaaaatgatttactatttatcaagcgaggtactatttttcttt 18226172  T

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Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 29 - 164
Target Start/End: Complemental strand, 18226660 - 18226526
Alignment:
Q  29 atttttaaaattgaatattaaactaaacgaattgatctcattttatattttgataataaaaatgtaggcttacggtgtaattcttcaatccaaagaagtg 128  Q
    ||||| ||||||||||||| ||||| |  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  18226660 attttaaaaattgaatattgaactataaaaattgatctcattttatattttgttaataaaaatgtaggcttacggtgtaattcttcaatccaaagaagag 18226561  T
Q  129 aaaatcttagaactcagaaaaatatatactcataaa 164  Q
    ||||| ||||||||| ||||||||||||||| ||||    
T  18226560 aaaatattagaactc-gaaaaatatatactcgtaaa 18226526  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 8745871 - 8745930
Alignment:
Q  199 gcttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttataca 258  Q
    ||||||||||||||||||||||||||| ||||||  |||| |||| |  |||||||||||    
T  8745871 gcttggatctcatcccaaaagttagcttaaaggatgaggatactcgaacatatttataca 8745930  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 41243214 - 41243269
Alignment:
Q  201 ttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttata 256  Q
    |||||||||||||||||||||||||||| |||  |||  |||||| ||||||||||    
T  41243214 ttggatctcatcccaaaagttagctcaacggatgaggttactcaagtatatttata 41243269  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 288
Target Start/End: Original strand, 19680324 - 19680418
Alignment:
Q  194 aatatgcttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttatacaatcgacatcccaaaaacctgagcgatgtgg 288  Q
    ||||||||||||||| |||||||||||||||||||| ||| ||| |||||||  |||||||||||||||||| |||  || ||||||||||||||    
T  19680324 aatatgcttggatcttatcccaaaagttagctcaaaagaggaggggactcaagcatatttatacaatcgacagcccggaatcctgagcgatgtgg 19680418  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 232
Target Start/End: Original strand, 23564560 - 23564591
Alignment:
Q  201 ttggatctcatcccaaaagttagctcaaagga 232  Q
    ||||||||||||||||||||||||||||||||    
T  23564560 ttggatctcatcccaaaagttagctcaaagga 23564591  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 194 - 264
Target Start/End: Complemental strand, 2346483 - 2346413
Alignment:
Q  194 aatatgcttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttatacaatcgac 264  Q
    |||| |||| |||||||||||||||| |||||| |||||| ||| || | ||  |||||||||||||||||    
T  2346483 aataagcttagatctcatcccaaaagctagctcgaaggaggaggggattgaagcatatttatacaatcgac 2346413  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 44019609 - 44019642
Alignment:
Q  199 gcttggatctcatcccaaaagttagctcaaagga 232  Q
    |||| |||||||||||||||||||||||||||||    
T  44019609 gcttagatctcatcccaaaagttagctcaaagga 44019642  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 201 - 288
Target Start/End: Original strand, 8402134 - 8402221
Alignment:
Q  201 ttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttatacaatcgacatcccaaaaacctgagcgatgtgg 288  Q
    |||||| |||||||||||||||||||||||||| |||  ||||||  ||||||||||| |||||| ||| |||||||||| |||||||    
T  8402134 ttggatttcatcccaaaagttagctcaaaggaggagggtactcaaacatatttatacactcgacagcccgaaaacctgagagatgtgg 8402221  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 201 - 282
Target Start/End: Original strand, 8402005 - 8402086
Alignment:
Q  201 ttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttatacaatcgacatcccaaaaacctgagcg 282  Q
    ||||||||||| ||||||||||||||||||||| |||  ||||||  ||||||||||| |||||| ||| | ||||||||||    
T  8402005 ttggatctcattccaaaagttagctcaaaggaggagggtactcaagcatatttatacactcgacagcccgagaacctgagcg 8402086  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 30135506 - 30135570
Alignment:
Q  194 aatatgcttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttataca 258  Q
    |||| ||||||||||||||||||||||||||||||| ||  |||  ||||||  |||||||||||    
T  30135506 aataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttataca 30135570  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 30141635 - 30141699
Alignment:
Q  194 aatatgcttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttataca 258  Q
    |||| ||||||||||||||||||||||||||||||| ||  |||  ||||||  |||||||||||    
T  30141635 aataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttataca 30141699  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 30145057 - 30145121
Alignment:
Q  194 aatatgcttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttataca 258  Q
    |||| ||||||||||||||||||||||||||||||| ||  |||  ||||||  |||||||||||    
T  30145057 aataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttataca 30145121  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 229
Target Start/End: Original strand, 30134110 - 30134145
Alignment:
Q  194 aatatgcttggatctcatcccaaaagttagctcaaa 229  Q
    |||| |||||||||||||||||||||||||||||||    
T  30134110 aataggcttggatctcatcccaaaagttagctcaaa 30134145  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 232
Target Start/End: Complemental strand, 50196964 - 50196933
Alignment:
Q  201 ttggatctcatcccaaaagttagctcaaagga 232  Q
    ||||||||||||||||||||||||||||||||    
T  50196964 ttggatctcatcccaaaagttagctcaaagga 50196933  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 30130793 - 30130878
Alignment:
Q  201 ttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttatacaatcgacatcccaaaaacctgagcgatgt 286  Q
    ||||||||||||||||||  ||||||||| ||  | || ||||||  ||||||||||| || ||| ||||| ||||||||| ||||    
T  30130793 ttggatctcatcccaaaaactagctcaaatgatgaagatactcaagcatatttatacactcaacagcccaagaacctgagcaatgt 30130878  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 11047562 - 11047474
Alignment:
Q  201 ttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttatacaatcgacatcccaaaaacctgagcgatgtggg 289  Q
    ||||||||||||  ||||||||||||||||||  |||  ||||||   |||||||||| || ||| | || |||||||||| |||||||    
T  11047562 ttggatctcatcataaaagttagctcaaaggatgagggtactcaagcgtatttatacactcaacagcgcacaaacctgagcaatgtggg 11047474  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 42160505 - 42160477
Alignment:
Q  201 ttggatctcatcccaaaagttagctcaaa 229  Q
    |||||||||||||||||||||||||||||    
T  42160505 ttggatctcatcccaaaagttagctcaaa 42160477  T

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