View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15105_low_1 (Length: 651)

Name: NF15105_low_1
Description: NF15105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15105_low_1
NF15105_low_1
[»] chr2 (6 HSPs)
chr2 (17-637)||(20926934-20927554)
chr2 (70-629)||(20952870-20953423)
chr2 (70-637)||(20934318-20934885)
chr2 (185-450)||(20923528-20923793)
chr2 (278-637)||(39273907-39274275)
chr2 (482-538)||(20923434-20923490)
[»] chr1 (25 HSPs)
chr1 (77-632)||(4322720-4323281)
chr1 (70-552)||(4334603-4335091)
chr1 (70-369)||(2006583-2006882)
chr1 (257-439)||(3361780-3361962)
chr1 (259-390)||(3378845-3378976)
chr1 (131-357)||(3218177-3218403)
chr1 (70-355)||(3349531-3349816)
chr1 (185-366)||(3340646-3340827)
chr1 (259-439)||(2012006-2012186)
chr1 (498-628)||(2948501-2948631)
chr1 (189-369)||(2019879-2020059)
chr1 (70-369)||(2948064-2948363)
chr1 (493-644)||(3361569-3361720)
chr1 (459-552)||(3345153-3345246)
chr1 (281-451)||(3372740-3372910)
chr1 (498-623)||(3340380-3340505)
chr1 (17-70)||(16315123-16315176)
chr1 (17-70)||(23941725-23941778)
chr1 (257-369)||(2010666-2010778)
chr1 (17-68)||(18426363-18426414)
chr1 (587-628)||(2006321-2006362)
chr1 (587-628)||(2010419-2010460)
chr1 (126-215)||(3341400-3341489)
chr1 (17-70)||(3368327-3368380)
chr1 (17-70)||(12063650-12063703)
[»] chr5 (5 HSPs)
chr5 (319-622)||(17969734-17970043)
chr5 (27-70)||(15235035-15235078)
chr5 (17-70)||(29195823-29195876)
chr5 (17-70)||(32910675-32910728)
chr5 (70-222)||(17970140-17970292)
[»] chr4 (10 HSPs)
chr4 (278-369)||(21237667-21237758)
chr4 (17-70)||(50008793-50008846)
chr4 (17-70)||(50336188-50336241)
chr4 (503-621)||(21237409-21237527)
chr4 (17-55)||(22182152-22182190)
chr4 (17-70)||(12656612-12656665)
chr4 (17-70)||(33990852-33990905)
chr4 (17-70)||(41419001-41419054)
chr4 (17-56)||(24972697-24972736)
chr4 (17-70)||(43209986-43210041)
[»] chr8 (5 HSPs)
chr8 (17-70)||(32075115-32075168)
chr8 (17-70)||(20532087-20532140)
chr8 (17-70)||(13868174-13868227)
chr8 (17-70)||(14189872-14189925)
chr8 (17-70)||(22661952-22662005)
[»] chr7 (9 HSPs)
chr7 (17-70)||(4278693-4278746)
chr7 (17-67)||(44222099-44222149)
chr7 (17-70)||(23941433-23941486)
chr7 (17-70)||(11356429-11356482)
chr7 (29-70)||(13070446-13070487)
chr7 (17-64)||(2834750-2834797)
chr7 (17-70)||(12868704-12868757)
chr7 (17-70)||(23562286-23562339)
chr7 (17-69)||(2369655-2369707)
[»] chr3 (7 HSPs)
chr3 (17-70)||(20518045-20518098)
chr3 (17-70)||(30933791-30933844)
chr3 (17-70)||(11917020-11917073)
chr3 (17-70)||(53767314-53767367)
chr3 (17-70)||(54335744-54335797)
chr3 (17-67)||(19867041-19867091)
chr3 (17-67)||(30528587-30528637)
[»] scaffold0599 (1 HSPs)
scaffold0599 (17-70)||(8771-8824)
[»] chr6 (1 HSPs)
chr6 (27-59)||(7452361-7452393)


Alignment Details
Target: chr2 (Bit Score: 577; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 17 - 637
Target Start/End: Complemental strand, 20927554 - 20926934
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcataattggaaagtattgtcaaagttaatatcctcatattcaccattga 116  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20927554 agtttctacgctcatcaagcatcaaatatcaggtaatgtatcatctaaactcataattggaaagtattttcaaagttaatatcctcatattcaccattga 20927455  T
Q  117 ttttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatcaacttctgtgaatttaaatttttcaagcagggggcagccagatatcaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20927454 ttttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatcaacttctgtgaatttaaatttttcaagcagggggcagccagatatcaa 20927355  T
Q  217 attttcgaaatcattttgagccactgttactagattcagatcaagactcttcaaactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20927354 attttcgaaatcattttgagccactgttactagattcagatcaagactcttcaaactcttaaagctttcaaacgtcgttggaggtttaagacaacaccaa 20927255  T
Q  317 tgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatcttgtagtatccctctatccaaacttccagcacaagctctttaatagagc 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20927254 tgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatcttggagtatccctctatccaaacttccagcacaagctctttaatagagc 20927155  T
Q  417 ttctagttagatgaagaatccactgatcaacatcagacatacgactctcatcaatgagagcacactcagagaacttgaacatgttgattgacccataatg 516  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  20927154 ttctagttagatgaagaatccactgatcaacatcagacacaagactctcatcaatgagagcacactcagagaacttgaacatgttgattggcccataatg 20927055  T
Q  517 aagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaacaggtcttcgaaagctgcagcagagacacattgactatcaaacacaaga 616  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||    
T  20927054 aagtaaaaggacatgatcagcaaatttcaaaaacttcctagcgataactaacaggtctttggaagctgcagcagagacacattgactatcaaagacaaga 20926955  T
Q  617 tttggtagtgtgtaccctttg 637  Q
    |||||||||||||||||||||    
T  20926954 tttggtagtgtgtaccctttg 20926934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 70 - 629
Target Start/End: Complemental strand, 20953423 - 20952870
Alignment:
Q  70 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 169  Q
    |||||| ||||| ||||| ||||||||| |||||||||| ||||  |||| |||||||||||||||||||||||| ||||||| ||||||||| ||||||    
T  20953423 taattgaaaagtgttgtcgaagttaataccctcatattcgccatcaatttccaaaaacttgagatttggtgcacgaatattaatttgggtgaaaccatca 20953324  T
Q  170 acttctgtgaatttaaatttttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttca 269  Q
    |||||| | ||||| |||||||||||||| ||||||||||| ||||| ||||| ||| ||| ||||||||||||||||||||||||||||||||||||||    
T  20953323 acttctatcaatttcaatttttcaagcagagggcagccagagatcaagttttcaaaagcatcttgagccactgttactagattcagatcaagactcttca 20953224  T
Q  270 aactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 369  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20953223 acctcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaatttcaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 20953124  T
Q  370 gtagtatccctctatccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccactgatcaacatcagacatacgactctcatca 469  Q
    |||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||  || |  ||||||| ||    
T  20953123 gtagtatcccgctatccaaaatttcagcacaagctctttaatagagcttctagttagatgaagaatccaccgatcaatatcactcagaaaactctcacca 20953024  T
Q  470 atgaga-gcacactcagagaacttgaacatgttgattgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaac 568  Q
    |||||| |  || ||| ||||||||||||||||||||| |||| ||||||||||||| ||||||||||||| |||||| ||||||||  | |||||||||    
T  20953023 atgagatgttca-tcatagaacttgaacatgttgattggcccagaatgaagtaaaagtacatgatcaacaattttcaataacttcctctcaataactaac 20952925  T
Q  569 aggtcttcgaaagctgcagcagagacacattgactatcaaacacaagatttggtagtgtgt 629  Q
     |||| || |  ||||||      ||||| |  |||||||||||||||||||| |||||||    
T  20952924 tggtcatcaatggctgca------acacaatttctatcaaacacaagatttggaagtgtgt 20952870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 70 - 637
Target Start/End: Complemental strand, 20934885 - 20934318
Alignment:
Q  70 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 169  Q
    |||||||||||| |||| |||||||||| |||||||||| |||| ||||| ||||||||||||||||||||||| ||||| || ||||| ||||||| ||    
T  20934885 taattggaaagtgttgttaaagttaataccctcatattcgccatggatttccaaaaacttgagatttggtgcacagatatcaatttgggcgaagccacca 20934786  T
Q  170 acttctgtgaatttaaatttttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttca 269  Q
    ||||| || ||||| |||||||||||||||||||||||||||||||| ||||| ||| ||| ||||||||||| |||  |||||||||||||||| ||||    
T  20934785 acttcggtcaatttcaatttttcaagcagggggcagccagatatcaagttttcaaaagcatcttgagccactgctacatgattcagatcaagacttttca 20934686  T
Q  270 aactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 369  Q
    | ||| ||||||||| ||||  |||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20934685 agctcctaaagcctttaaacaacgttggaggtttaagacaacagaaatgtaatttcaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 20934586  T
Q  370 gtagtatccctctatccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccactgatcaacatcagacatacgactctcatca 469  Q
    ||||  | ||||| | ||||| |||||||||||||||||||||||  | ||| ||||||  |||||||||||||||||||| |||| | |||||||||||    
T  20934585 gtagagttcctctgtacaaacatccagcacaagctctttaatagacttcctacttagatatagaatccactgatcaacatcggacacaagactctcatca 20934486  T
Q  470 atgagagcacactcagagaacttgaacatgttgattgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaaca 569  Q
    ||| ||||||||  |||||||||||| |||||||||| |||| ||||| ||||||| |||  || ||||| ||||||||| ||| |    |||||||||     
T  20934485 atgggagcacacatagagaacttgaatatgttgattggcccagaatgatgtaaaagtacactattaacaattttcaaaaatttcatctgaataactaacg 20934386  T
Q  570 ggtcttcgaaagctgcagcagagacacattgactatcaaacacaagatttggtagtgtgtaccctttg 637  Q
     ||||||| ||||||||||||||| |||||| |||||||||||||||||||| |||||||||| ||||    
T  20934385 tgtcttcgtaagctgcagcagagagacattgtctatcaaacacaagatttgggagtgtgtaccatttg 20934318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 185 - 450
Target Start/End: Complemental strand, 20923793 - 20923528
Alignment:
Q  185 aatttttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttcaaactcttaaagcctt 284  Q
    |||||||||||||  ||| ||||||||||||| ||||| ||| ||| || ||||||||| ||| | | ||  | |||||| |||||  || | |||||||    
T  20923793 aatttttcaagcaaaggggagccagatatcaagttttcaaaagcatctttagccactgtaacttgttccaattgaagacttttcaagttcatgaagcctt 20923694  T
Q  285 caaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatcttgtagtatccctctat 384  Q
    ||||| ||| ||||||||||||  || | |||   || |||||||||||||||||||||||||||||||||||||||||||| || |||  |  ||| |     
T  20923693 caaacatcgctggaggtttaagcgaagaacaaaacaaatttaaatgatgtaaactttgacaagagaataagcaccaaggtatgttatagcgttgctcgaa 20923594  T
Q  385 ccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccactgatcaacatc 450  Q
    |||||  |||||| |||| | ||||||||| ||||| |||||||||||||||||| ||||||||||    
T  20923593 ccaaatgtccagctcaagatttttaatagaccttcttgttagatgaagaatccaccgatcaacatc 20923528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 278 - 637
Target Start/End: Complemental strand, 39274275 - 39273907
Alignment:
Q  278 aagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatcttgtag-tat 376  Q
    ||||||||||| || |||||||||||||| ||||| |||   || |||||| | || ||||||||||| ||||||||||||||||||||||| ||| | |    
T  39274275 aagccttcaaatgttgttggaggtttaagccaacaacaagccaactttaaacgttgcaaactttgacaggagaataagcaccaaggtatcttatagattt 39274176  T
Q  377 c--cctctatccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccactgatcaacatcagacatacgactctcatcaatga- 473  Q
    |  |||||  | |||| | ||||||||||||||||||||| ||||   |||||| || ||||||| ||||||  |||  |  | || || | |||| ||     
T  39274175 catcctctgccaaaacatgcagcacaagctctttaatagaccttccgattagataaacaatccaccgatcaaattcattcccaggaatcccttcaacgaa 39274076  T
Q  474 -----gagcacactcagagaacttgaacatgttgattgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaac 568  Q
         || || | |||||||||| |||| ||||||| |  ||| | ||||||||||| ||||||||||||| |||||||| |||  |  | ||| ||||     
T  39274075 atcctgaccagagtcagagaactcgaacttgttgataggtccagagtgaagtaaaagtacatgatcaacaattttcaaaagcttgttctcaatatctaaa 39273976  T
Q  569 aggtcttcgaaagctgcagcagagacacattgactatcaaacacaagatttggtagtgtgtaccctttg 637  Q
     |||||| | || ||  ||||||||||||  | ||||||||||||||||||||||||||||||| ||||    
T  39273975 gggtcttgggaacctctagcagagacacaacgtctatcaaacacaagatttggtagtgtgtaccatttg 39273907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 482 - 538
Target Start/End: Complemental strand, 20923490 - 20923434
Alignment:
Q  482 tcagagaacttgaacatgttgattgacccataatgaagtaaaaggacatgatcaaca 538  Q
    ||||||| ||||||| ||||||||| |||| ||||||||||||| ||||| ||||||    
T  20923490 tcagagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaaca 20923434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 77 - 632
Target Start/End: Original strand, 4322720 - 4323281
Alignment:
Q  77 aaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatcaacttctg 176  Q
    ||||| ||||||||| ||||| ||||  ||  ||| | |||||  ||||||||||||||||||||| ||||||||| |||||| || |||||||||||||    
T  4322720 aaagtgttgtcaaaggtaataccctcgaatagaccttcgatttcaaaaaacttgagatttggtgcatggatattaatttgggttaaaccatcaacttctg 4322819  T
Q  177 tgaatttaaatttttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttcaaactctt 276  Q
    | ||||| |  |||||||||| ||||||    |||||||  ||||| ||| ||| |||| ||||||| || ||||| ||||||||||| |||||  |  |    
T  4322820 tcaatttcatcttttcaagcaaggggcatttggatatcatgttttcaaaagcatcttgatccactgtaaccagatttagatcaagacttttcaagtttct 4322919  T
Q  277 aaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatcttgtagtat 376  Q
     |||| |||||||  | | ||||||||||| ||||||||   ||||||||| |  |||||||||||||| |||||||| ||||||||||||| |||||||    
T  4322920 gaagctttcaaacaccatcggaggtttaagccaacaccatcttaattttaagttgtgtaaactttgacatgagaataaacaccaaggtatctggtagtat 4323019  T
Q  377 cc---ctctatccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccactgatcaacatcagacatacgact---ctcatcaa 470  Q
     |   |||||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||| ||||||| |||  || | ||||   |||| ||     
T  4323020 tcttcctctatccaaacttccagcacaagctctttaatagaccttccaattagataaagaatccaccgatcaacgtcactcacaagactcccctcaccag 4323119  T
Q  471 tgagagcacactcagagaacttgaacatgttgattgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaacag 570  Q
     |||| || | | | ||||||||||||||||||||| |||| ||||||||||||| ||||||||||| | |||| |||||||     | ||||||||  |    
T  4323120 ggagatcatagttacagaacttgaacatgttgattggcccagaatgaagtaaaagtacatgatcaaccattttcgaaaacttgggctcaataactaaagg 4323219  T
Q  571 gtcttcgaaagctgcagcagagacacattgactatcaaacacaagatttggtagtgtgtacc 632  Q
    ||||| | ||||| ||||||| |||||||| ||||||| |||||||||||| ||||| ||||    
T  4323220 gtcttgggaagcttcagcagacacacattgtctatcaagcacaagatttggaagtgtatacc 4323281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 70 - 552
Target Start/End: Original strand, 4334603 - 4335091
Alignment:
Q  70 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 169  Q
    |||||||||||| ||| ||||| ||| | ||||| ||||||||  |||||  ||||||||||||||||||||| | ||||||| ||| || || |||| |    
T  4334603 taattggaaagtgttgccaaaggtaacaacctcaaattcaccaacgatttcaaaaaacttgagatttggtgcatgaatattaatttgcgttaaaccataa 4334702  T
Q  170 acttctgtgaatttaaatttttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttca 269  Q
    | |||| | ||| | || |||||||||| |||||| | ||| || || ||||| ||| ||| |||| | |   | ||||||   ||||||||||| ||||    
T  4334703 aattctctcaatctcaacttttcaagcaaggggcacctagagataaagttttcaaaagcatcttgaacaatattcactagacatagatcaagacttttca 4334802  T
Q  270 aactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 369  Q
    |  |  |||||||||||||| ||||||||||||||||  |||||| || ||||||||||  ||||||||||||||| |||||||| |||||||||| |||    
T  4334803 agtttctaaagccttcaaacatcgttggaggtttaagcaaacacccatttaattttaaagaatgtaaactttgacatgagaataaacaccaaggtaactt 4334902  T
Q  370 gtagtatccctctatccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccactgatcaacatcagacatacgact---ctca 466  Q
    ||||||  | |||||||||||||||| |||||||||||||||||| |||| | ||||||||||||||||| ||||||  | || || | ||||   |||     
T  4334903 gtagtaatcatctatccaaacttccaacacaagctctttaatagaccttccaattagatgaagaatccaccgatcaatgttagtcacaagactatcctcg 4335002  T
Q  467 tcaatgagagca-ca--ctcagagaacttgaacatgttgattgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaactt 552  Q
     | |||||| || ||   | |||||||||||||||||||||||  ||| |||||| |||||| ||||||||||||| || |||||||||    
T  4335003 cccatgagatcatcaacgttagagaacttgaacatgttgattggtccagaatgaactaaaagtacatgatcaacaatttgcaaaaactt 4335091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 70 - 369
Target Start/End: Complemental strand, 2006882 - 2006583
Alignment:
Q  70 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 169  Q
    |||||||||||| ||||||||| ||||||||||| ||| ||||  ||| | ||||| ||| |||||||||||  | || || | ||||||||| ||||||    
T  2006882 taattggaaagtgttgtcaaagctaatatcctcaaatttaccacagatatccaaaaccttaagatttggtgcgtgaatgtttatttgggtgaaaccatca 2006783  T
Q  170 acttctgtgaatttaaatttttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttca 269  Q
    | |||||| ||| | || ||||||||||| ||||| | |||||||||||| || ||| |||  |||| ||   | ||  ||| || ||||||||| || |    
T  2006782 agttctgtcaatgtcaaattttcaagcagagggcaactagatatcaaattctcaaaagcatactgagacatgctaacatgatccaaatcaagacttttta 2006683  T
Q  270 aactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 369  Q
    |  |||| |||||||||| ||||| ||||||||||||  ||||  ||| |||| ||| ||||||||||||||||||||| ||||||||||||||||||||    
T  2006682 agttcttcaagccttcaatcgtcgatggaggtttaagcaaacaataatataatgttagatgatgtaaactttgacaagaaaataagcaccaaggtatctt 2006583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 257 - 439
Target Start/End: Complemental strand, 3361962 - 3361780
Alignment:
Q  257 tcaagactcttcaaactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagc 356  Q
    |||||||| |||||  |||| |||||||||||||| |||||||||||||| ||||| || | ||||| ||||||||||||||||||||||||||||||||    
T  3361962 tcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagc 3361863  T
Q  357 accaaggtatcttgtagtatccctctatccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccac 439  Q
    ||||||| ||||| |||  | | |||| |||||  | |||||||| |||||||||||  ||||  ||||| |||| |||||||    
T  3361862 accaagggatcttatagcgttcgtctaaccaaatgtgcagcacaaactctttaataggccttcgggttaggtgaataatccac 3361780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 259 - 390
Target Start/End: Complemental strand, 3378976 - 3378845
Alignment:
Q  259 aagactcttcaaactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcac 358  Q
    |||||| |||||| |||| |||||||||||  | |||||||||||||| | ||| |||| |||  |||||||| ||||||||||||||||||||||||||    
T  3378976 aagacttttcaaattcttgaagccttcaaatattgttggaggtttaagtcgacaacaatataagcttaaatgacgtaaactttgacaagagaataagcac 3378877  T
Q  359 caaggtatcttgtagtatccctctatccaaac 390  Q
    || | |||||| ||  || |||||||||||||    
T  3378876 catgttatcttataacattcctctatccaaac 3378845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 131 - 357
Target Start/End: Original strand, 3218177 - 3218403
Alignment:
Q  131 agatttggtgcacggatattaacttgggtgaagccatcaacttctgtgaatttaaatttttcaagcagggggcagccagatatcaaattttcgaaatcat 230  Q
    |||||||||||| ||||||||| |||||| || || ||||  | |   ||||| || | ||| |||||| ||||||| |||||||| ||||| ||| |||    
T  3218177 agatttggtgcatggatattaagttgggttaaaccttcaagatataacaatttcaaatcttctagcaggtggcagccggatatcaagttttcaaaagcat 3218276  T
Q  231 tttgagccactgttactagattcagatcaagactcttcaaactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatg 330  Q
     |||||||| ||| ||  |||  || |||||||| |||||  |||| ||||||| |||||| |||||||||| || |||||| || | |||||||||||     
T  3218277 cttgagccattgtaacctgatatagttcaagacttttcaagttcttgaagcctttaaacgttgttggaggttgaatacaacaacagtctaattttaaatt 3218376  T
Q  331 atgtaaactttgacaagagaataagca 357  Q
     |||||||||||||| ||||| |||||    
T  3218377 ctgtaaactttgacatgagaacaagca 3218403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 70 - 355
Target Start/End: Complemental strand, 3349816 - 3349531
Alignment:
Q  70 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 169  Q
    |||||| ||||| |||||||||||||||  |||| ||||| | | |||||  |||||||||||| |||||||| |||||||||  ||||| || ||||||    
T  3349816 taattgaaaagtgttgtcaaagttaatactctcaaattcatcttcgatttcaaaaaacttgagacttggtgcatggatattaatatgggttaaaccatca 3349717  T
Q  170 acttctgtgaatttaaatttttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttca 269  Q
    | || ||| ||| | ||| | |||||||||||||||||||| ||||  || | |||| ||| ||||| || ||| ||  |||||| || |||||| ||||    
T  3349716 atttttgtcaatgtcaatctctcaagcagggggcagccagacatcatgttattgaaagcatcttgagtcattgtaacccgattcaaataaagacttttca 3349617  T
Q  270 aactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataag 355  Q
     | ||   |||||||||||  | |||||||||||||| || ||  |||  |  |||||||| ||||||| ||| || |||||||||    
T  3349616 gattccggaagccttcaaaaattgttggaggtttaagccagcaataattcagatttaaatgttgtaaaccttggcaggagaataag 3349531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 185 - 366
Target Start/End: Complemental strand, 3340827 - 3340646
Alignment:
Q  185 aatttttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttcaaactcttaaagcctt 284  Q
    |||| ||||||||||||||||||| ||||||  ||||| ||| ||| ||||| || ||| |||  |  || |  |||||| |||||| ||   |||||||    
T  3340827 aattcttcaagcagggggcagccacatatcatgttttcaaaagcatcttgagtcattgtaacttcaaacaaagaaagacttttcaaattccggaagcctt 3340728  T
Q  285 caaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtat 366  Q
    |||||||||||||||| ||||| |||||  |||  | || |||||| || ||||||||||||||||||||||| ||||||||    
T  3340727 caaacgtcgttggaggattaaggcaacaataattcagttctaaatgttgcaaactttgacaagagaataagcagcaaggtat 3340646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 259 - 439
Target Start/End: Complemental strand, 2012186 - 2012006
Alignment:
Q  259 aagactcttcaaactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcac 358  Q
    |||||| |||||  |||| |||||||||| | ||| ||||||||||||  ||||  ||  |||| ||| || |||||| ||||||||||| |||||||||    
T  2012186 aagacttttcaagttcttcaagccttcaatcatcgatggaggtttaagcaaacaagaaaataatgttagataatgtaagctttgacaagaaaataagcac 2012087  T
Q  359 caaggtatcttgtagtatccctctatccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccac 439  Q
    ||||||||||| ||  ||    ||||| | | | |||||||||||||||| ||||| ||||| |||||||||| |||||||    
T  2012086 caaggtatcttatatgattgtcctatcgataatcccagcacaagctctttgatagaccttctggttagatgaaaaatccac 2012006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 498 - 628
Target Start/End: Original strand, 2948501 - 2948631
Alignment:
Q  498 tgttgattgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaacaggtcttcgaaagctgcagcagagacaca 597  Q
    ||||||||| |||| ||||||||||||| ||||||||||||| | |||||||||| ||  | |||||| |  |||||| | ||  ||||| ||| |||||    
T  2948501 tgttgattggcccagaatgaagtaaaagtacatgatcaacaattctcaaaaacttgctctcaataactgaagggtctttggaaattgcagtagatacaca 2948600  T
Q  598 ttgactatcaaacacaagatttggtagtgtg 628  Q
    | |||||||||||||||||| |||| |||||    
T  2948601 tcgactatcaaacacaagatctggttgtgtg 2948631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 189 - 369
Target Start/End: Complemental strand, 2020059 - 2019879
Alignment:
Q  189 tttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttcaaactcttaaagccttcaaa 288  Q
    |||||||||| ||||| |||||||||||| | || ||||||| ||||| ||  || |   ||| ||  | |||||| |||||  |||||||||||||||     
T  2020059 tttcaagcagagggcaaccagatatcaaaatctcaaaatcatcttgagacatagtaatgtgatccaacttaagacttttcaagttcttaaagccttcaat 2019960  T
Q  289 cgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 369  Q
    ||||| ||||||||||||  ||||  ||  |||  ||| |||| |||| ||||||||||| ||||||||||||||||||||    
T  2019959 cgtcgatggaggtttaagcaaacaataagataaacttagatgaagtaagctttgacaagaaaataagcaccaaggtatctt 2019879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 369
Target Start/End: Original strand, 2948064 - 2948363
Alignment:
Q  70 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 169  Q
    |||||| ||||| |||||||||||||||  |||| ||||| | | || ||  ||||||||||||||||||||| | |||||||  || || || ||||||    
T  2948064 taattgaaaagtgttgtcaaagttaatactctcaaattcatcgtcgacttcaaaaaacttgagatttggtgcatgaatattaatatgagttaaaccatca 2948163  T
Q  170 acttctgtgaatttaaatttttcaagcagggggcagccagatatcaaattttcgaaatcattttgagccactgttactagattcagatcaagactcttca 269  Q
    | || ||  ||| | ||||| || |||| |||||||||| ||||||  || | |||| ||| ||||  || ||| ||  |||||| || |||| | ||||    
T  2948164 atttttgccaatgtcaatttctctagcacggggcagccatatatcatgttattgaaagcatcttgactcattgtaacccgattcaaataaagaattttca 2948263  T
Q  270 aactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 369  Q
     ||||   |||||||||||| | |||||||||||||| |||||  |||  |  | |||||||||||||| ||| || ||||||||| |  ||||||||||    
T  2948264 tactccggaagccttcaaactttgttggaggtttaagccaacaataattcagatctaaatgatgtaaaccttggcaggagaataaggatgaaggtatctt 2948363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 493 - 644
Target Start/End: Complemental strand, 3361720 - 3361569
Alignment:
Q  493 gaacatgttgattgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaacaggtcttcgaaagctgcagcagag 592  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||| | ||||||||||  ||  ||||||  |  |||||| | || ||| | |||||    
T  3361720 gaacttgttgattggcccataatgaagtaaaagtacatgatcaacaattctcaaaaacttgttattgataaccgaagggtcttgggaatctgtatcagag 3361621  T
Q  593 acacattgactatcaaacacaagatttggtagtgtgtaccctttgctactcc 644  Q
    |  || ||  ||||||| |||||||||||||| ||||||| |||| ||||||    
T  3361620 atgcaatgtttatcaaatacaagatttggtagcgtgtaccatttgttactcc 3361569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 459 - 552
Target Start/End: Original strand, 3345153 - 3345246
Alignment:
Q  459 gactctcatcaatgagagcacactcagagaacttgaacatgttgattgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaactt 552  Q
    ||||||||  ||||||| |||| ||||||||||| |||||||| |||| |||| ||||||||||| | ||||||| ||||| ||||||| ||||    
T  3345153 gactctcactaatgagatcacattcagagaacttaaacatgtttattgtcccaaaatgaagtaaatgcacatgattaacaattttcaaacactt 3345246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 281 - 451
Target Start/End: Complemental strand, 3372910 - 3372740
Alignment:
Q  281 ccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatcttgtagtatccct 380  Q
    ||||||||||| |||||| |||||||   ||| |||  |||  |||||||| |||||||||||||||||||||| | | |||||||||| ||   |   |    
T  3372910 ccttcaaacgttgttggaagtttaagttgacaacaagataagcttaaatgacgtaaactttgacaagagaataaactcaaaggtatcttataacgtttgt 3372811  T
Q  381 ctatccaaacttccagcacaagctctttaatagagcttctagttagatgaagaatccactgatcaacatca 451  Q
    ||| |||||  | ||||| ||||||||| ||||| ||||||| ||||||||||| |||  ||| |||||||    
T  3372810 ctaaccaaaagtgcagcagaagctcttttatagaccttctagatagatgaagaacccaacgatgaacatca 3372740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 623
Target Start/End: Complemental strand, 3340505 - 3340380
Alignment:
Q  498 tgttgattgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaacaggtcttcgaaagctgcagcagagacaca 597  Q
    ||||||||| |||| ||||||||||||| ||||||||||||| | | |||||||| ||  | |||||| |  ||| || | ||| | ||| ||| |||||    
T  3340505 tgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctctcaataactgaagggtgtttggaagtttcagtagatacaca 3340406  T
Q  598 ttgactatcaaacacaagatttggta 623  Q
    || || |||||||||||||| |||||    
T  3340405 ttcacgatcaaacacaagatctggta 3340380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 16315176 - 16315123
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| |||||||||||| ||||||| ||||| ||||||||| ||||||||    
T  16315176 agtttctacgctcatcaagcaccaaatataaggtattgtatcatcaaaactcat 16315123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 23941725 - 23941778
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| | |||||||||| ||||||||||||| ||||||||| ||||||||    
T  23941725 agtttctacgttcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 23941778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 257 - 369
Target Start/End: Complemental strand, 2010778 - 2010666
Alignment:
Q  257 tcaagactcttcaaactcttaaagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagc 356  Q
    |||||||| |||||  ||||||||||| |||  |||| ||||||||||||  |||   ||  |||  ||| |||| |||| ||||||||||| |||||||    
T  2010778 tcaagacttttcaagttcttaaagcctacaattgtcgatggaggtttaagcaaaccataagataaacttagatgaagtaagctttgacaagaaaataagc 2010679  T
Q  357 accaaggtatctt 369  Q
    |||||||||||||    
T  2010678 accaaggtatctt 2010666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 18426414 - 18426363
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactc 68  Q
    |||||||| ||||||||| | ||||| ||||| |||||||||||||||||||    
T  18426414 agtttctacgctcatcaaacgtcaaaaatcagataatgtatcatctaaactc 18426363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 587 - 628
Target Start/End: Complemental strand, 2006362 - 2006321
Alignment:
Q  587 gcagagacacattgactatcaaacacaagatttggtagtgtg 628  Q
    ||||||||||||||  ||||||||||||||||||||| ||||    
T  2006362 gcagagacacattgtttatcaaacacaagatttggtattgtg 2006321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 587 - 628
Target Start/End: Complemental strand, 2010460 - 2010419
Alignment:
Q  587 gcagagacacattgactatcaaacacaagatttggtagtgtg 628  Q
    ||||||||||||||  ||||||||||||||||||||| ||||    
T  2010460 gcagagacacattgtttatcaaacacaagatttggtattgtg 2010419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 3341489 - 3341400
Alignment:
Q  126 acttgagatttggtgcacggatattaacttgggtgaagccatcaacttctgtgaatttaaatttttcaagcagggggcagccagatatca 215  Q
    ||||||||||||||||| | |||||||  || || || ||||||| |||| | ||| | |||| |||||| |||||||||| ||||||||    
T  3341489 acttgagatttggtgcatgaatattaatctgtgttaaaccatcaatttctttcaatgtcaattcttcaagtagggggcagctagatatca 3341400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 3368327 - 3368380
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    ||||||||  || ||||||||||||| |||| ||||||||||||| ||||||||    
T  3368327 agtttctacacttatcaagcatcaaacatcaagtaatgtatcatcaaaactcat 3368380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 12063650 - 12063703
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    ||||||||  |||||||||||  |||||||||||| ||||||||| ||||||||    
T  12063650 agtttctacactcatcaagcactaaatatcaggtattgtatcatcaaaactcat 12063703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 319 - 622
Target Start/End: Complemental strand, 17970043 - 17969734
Alignment:
Q  319 taattttaaatgatgtaaactttgacaagagaataagcaccaaggtatcttgtagtatccctctatccaaacttccagcacaagctctttaatagagctt 418  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||| |||  | || ||  |||||  |||| |||||||||||||| ||| |||    
T  17970043 taattttaaatgatgtaaactttgataagaaaataagcaccaaggtatcttatagagttcccctgcccaaatgtccaacacaagctctttaacagatctt 17969944  T
Q  419 ctagttagatgaagaatccactgatcaacatcagacatacgactctcatcaatgagagcacactcagag-----aactt-gaacatgttgattgacccat 512  Q
    | ||||||||||||||||||| |||||||||||| ||||    || || ||| |||| |||| ||||||      ||||  ||| ||||||||| |||      
T  17969943 ccagttagatgaagaatccaccgatcaacatcagccatagagttcacaccaaggagatcacattcagagtcagtgacttcaaacttgttgattggccctg 17969844  T
Q  513 aatgaagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaacaggtcttcgaaagctgcagcagagacacattgactatcaaacac 612  Q
    ||||||||||||| ||||||||||  | | |||||||||| |   |||||||| | | ||||||| ||||| ||| ||| |||||||| |||||||||||    
T  17969843 aatgaagtaaaagtacatgatcaatgattctcaaaaacttgccctcgataactgaaaagtcttcggaagctacagtagatacacattgtctatcaaacac 17969744  T
Q  613 aagatttggt 622  Q
    ||||| ||||    
T  17969743 aagatctggt 17969734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 15235078 - 15235035
Alignment:
Q  27 ctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  15235078 ctcatcaagcatcaaatatcaagtaatgtatcatctaaactcat 15235035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 29195876 - 29195823
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| |||||||||||| ||||||||||||| | ||||||| ||||||||    
T  29195876 agtttctacgctcatcaagcaccaaatatcaggtattatatcatcaaaactcat 29195823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 32910675 - 32910728
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    ||||||||  ||||||||||| ||||||||||||| ||||||||| ||||||||    
T  32910675 agtttctacactcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 32910728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 222
Target Start/End: Complemental strand, 17970292 - 17970140
Alignment:
Q  70 taattggaaagtattgtcaaagttaatatcctcatattcaccattgattttcaaaaacttgagatttggtgcacggatattaacttgggtgaagccatca 169  Q
    |||||| ||||| ||||||||| | ||  ||||| ||| |||||||||    ||||||||||||||||||||  | |||||||  || ||||| || | |    
T  17970292 taattgcaaagtgttgtcaaagctgatgccctcaaatttaccattgatgcgaaaaaacttgagatttggtgcgtgaatattaaactgagtgaaaccctta 17970193  T
Q  170 acttctgtgaatttaaatttttcaagcagggggcagccagatatcaaattttc 222  Q
    |||  ||| ||| | |||||||||||| | |||||||| |||||||| |||||    
T  17970192 actgatgtcaatattaatttttcaagctgagggcagccggatatcaagttttc 17970140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 278 - 369
Target Start/End: Complemental strand, 21237758 - 21237667
Alignment:
Q  278 aagccttcaaacgtcgttggaggtttaagacaacaccaatgtaattttaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 369  Q
    |||||||||||||| |||||||||||||| ||||| |    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21237758 aagccttcaaacgttgttggaggtttaagccaacaacttgttaattctaaatgatgtaaactttgacaagagaataagcaccaaggtatctt 21237667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 50008846 - 50008793
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  50008846 agtttctacgctcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 50008793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 50336241 - 50336188
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  50336241 agtttctatgctcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 50336188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 503 - 621
Target Start/End: Complemental strand, 21237527 - 21237409
Alignment:
Q  503 attgacccataatgaagtaaaaggacatgatcaacaaatttcaaaaacttcctagcgataactaacaggtcttcgaaagctgcagcagagacacattgac 602  Q
    ||||||||| ||||||||| ||| ||||||||||||| | ||||||||||  ||  |||| || |  ||||||  |||| |||| |||||||||| ||      
T  21237527 attgacccagaatgaagtagaagtacatgatcaacaattctcaaaaacttgttactgatacctgaagggtcttgaaaagttgcatcagagacacaatgtt 21237428  T
Q  603 tatcaaacacaagatttgg 621  Q
    |||| ||||||||||||||    
T  21237427 tatcgaacacaagatttgg 21237409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 22182190 - 22182152
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgt 55  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  22182190 agtttctacgctcatcaagcatcaaatatcaggtaatgt 22182152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 12656612 - 12656665
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| |||||||||||| ||||||||||||| | ||||||| ||||||||    
T  12656612 agtttctacgctcatcaagcaccaaatatcaggtattatatcatcaaaactcat 12656665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 33990852 - 33990905
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| |||||||||||| ||||||||| ||| ||||||||| ||||||||    
T  33990852 agtttctacgctcatcaagcaccaaatatcaagtattgtatcatcaaaactcat 33990905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 41419001 - 41419054
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||  ||||||||    
T  41419001 agtttctacgctcatcaagcaccaaatatcaggtattgtatcataaaaactcat 41419054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 24972697 - 24972736
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgta 56  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  24972697 agtttctacgctcatcaagcatcaaataacaggtaatgta 24972736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 43210041 - 43209986
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcagg--taatgtatcatctaaactcat 70  Q
    |||||||| |||||||||||| |||||||||||  || ||||||||| ||||||||    
T  43210041 agtttctacgctcatcaagcaccaaatatcaggtatattgtatcatcaaaactcat 43209986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 32075115 - 32075168
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32075115 agtttctacgctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 32075168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 20532140 - 20532087
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  20532140 agtttctacgctcatcaagcatcaaataccaggtaatgtatcatctaaactcat 20532087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 13868227 - 13868174
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    ||||||||  ||||||||||||||||||| ||||||||||||||||||||||||    
T  13868227 agtttctacactcatcaagcatcaaatattaggtaatgtatcatctaaactcat 13868174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 14189872 - 14189925
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||| ||| ||||||||||||| ||| |||||||||| |||||||| |||||||    
T  14189872 agttactacgctcatcaagcataaaaaatcaggtaatatatcatcttaactcat 14189925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 22661952 - 22662005
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| |||||||||||| ||| ||| ||||| ||||||||| ||||||||    
T  22661952 agtttctacgctcatcaagcaccaagtattaggtattgtatcatcaaaactcat 22662005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 4278693 - 4278746
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||||||||||||    
T  4278693 agtttctacgctcatcaagcaccaaatatcaggtattgtatcatctaaactcat 4278746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 44222099 - 44222149
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaact 67  Q
    |||||||| |||||||||||||||||||||||||| ||||||||| |||||    
T  44222099 agtttctacgctcatcaagcatcaaatatcaggtattgtatcatcaaaact 44222149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 23941433 - 23941486
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  23941433 agtttctacgctcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 23941486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 11356429 - 11356482
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| | |||||||||| ||||||||||||| ||||||||| ||||||||    
T  11356429 agtttctacgttcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 11356482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 13070487 - 13070446
Alignment:
Q  29 catcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  13070487 catcaagcatcaaatatcagacaatgtatcatctaaactcat 13070446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 2834750 - 2834797
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaa 64  Q
    |||||||| ||||||||| | ||||| |||||||||||||||||||||    
T  2834750 agtttctacgctcatcaaacgtcaaaaatcaggtaatgtatcatctaa 2834797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 12868704 - 12868757
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    ||||||||  |||||||||||| ||| ||||| ||||||||||||| |||||||    
T  12868704 agtttctacactcatcaagcataaaaaatcagataatgtatcatcttaactcat 12868757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 23562339 - 23562286
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| ||||||||||||| ||| |||| |||||||||||| | |||||||    
T  23562339 agtttctacgctcatcaagcattaaaaatcaagtaatgtatcattttaactcat 23562286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 2369707 - 2369655
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactca 69  Q
    ||||||||  |||||||||||||||| | ||||||||||||| || |||||||    
T  2369707 agtttctacactcatcaagcatcaaagaacaggtaatgtatcctcaaaactca 2369655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 20518098 - 20518045
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  20518098 agtttctacgctcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 20518045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 30933844 - 30933791
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  30933844 agtttctacgctcatcaagcaccaaatatcaggtattgtatcatcaaaactcat 30933791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 11917020 - 11917073
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| ||||||||||||  |||||||||||| ||||||||| ||||||||    
T  11917020 agtttctacgctcatcaagcacaaaatatcaggtattgtatcatcaaaactcat 11917073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 53767314 - 53767367
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| |||||||||||| ||||||||| ||| ||||||||| ||||||||    
T  53767314 agtttctacgctcatcaagcaccaaatatcatgtattgtatcatcaaaactcat 53767367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 54335744 - 54335797
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| |||||||||||| ||||||||||||| | ||||||| ||||||||    
T  54335744 agtttctacgctcatcaagcaccaaatatcaggtattatatcatcaaaactcat 54335797  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 19867041 - 19867091
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaact 67  Q
    |||||||| ||||||||||||||||| | ||||||||||||| || |||||    
T  19867041 agtttctacgctcatcaagcatcaaagaacaggtaatgtatcgtcaaaact 19867091  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 30528587 - 30528637
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaact 67  Q
    ||||||||  |||||||| |||||||||||| ||||| |||||||||||||    
T  30528587 agtttctatactcatcaaacatcaaatatcatgtaatctatcatctaaact 30528637  T

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Target: scaffold0599 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 8771 - 8824
Alignment:
Q  17 agtttctaggctcatcaagcatcaaatatcaggtaatgtatcatctaaactcat 70  Q
    |||||||| ||||||||||||  |||||||||||| ||||||||| ||||||||    
T  8771 agtttctacgctcatcaagcacaaaatatcaggtattgtatcatcaaaactcat 8824  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 7452393 - 7452361
Alignment:
Q  27 ctcatcaagcatcaaatatcaggtaatgtatca 59  Q
    |||||||| ||||||||||||||||||||||||    
T  7452393 ctcatcaaacatcaaatatcaggtaatgtatca 7452361  T

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