View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15105_low_12 (Length: 383)
Name: NF15105_low_12
Description: NF15105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15105_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 37071485 - 37071122
Alignment:
| Q |
1 |
aatgttaaccatgcaaaacaatcagtactttaccttgctgttgatagcaaggacaaggaagcagtcgaagtaatcatggagaactgccccagctatgttg |
100 |
Q |
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| T |
37071485 |
aatgttaaccatgcaaaacaatcagtactttaccttgctgttgatagcaaggacaaggaagcagtcgaagtaatcatggagaactgccccagctatgttg |
37071386 |
T |
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| Q |
101 |
ctaccccaaagggattatcgcccgtcgtagcagcaatcatgaagcggaatcaaggtaatatttataaaggaatgttatttgaataaccactttttgagac |
200 |
Q |
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| T |
37071385 |
ctaccccaaagggattatcgcccgtcgtagcagcaatcatgaagcggaatcaaggtaatatttataaaggaatgttatttgaataaccactttttgagac |
37071286 |
T |
|
| Q |
201 |
aatttattattgaatctatgaaaccaaatgattaatatcaaatggttaaataactagttctagttagtataaatagttttggttaataacaatatgttcg |
300 |
Q |
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| T |
37071285 |
aatttattattgaatctatgaaaccaaatgattaatatcaaatggttaaataactagttctagttagtataaatagttttggttaataacaatatgttcg |
37071186 |
T |
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| Q |
301 |
aggaatccgagtttaaatcatagttnnnnnnnnttctttgttagatttcacttacctttatgtc |
364 |
Q |
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| T |
37071185 |
aggaatccgagtttaaatcatagttaaaaaaaattctttgttagatttcacttacctttatgtc |
37071122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 37081326 - 37081167
Alignment:
| Q |
1 |
aatgttaaccatgcaaaacaatcagtactttaccttgctgttgatagcaaggacaaggaagcagtcgaagtaatcatggagaactgccccagctatgttg |
100 |
Q |
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| T |
37081326 |
aatgttaaccatgcaaaacaatcaatactttaccttgcagttgaaaatggggacaaggaagcagtcaaagtaatcatggcgaatcgccccaacaatgttg |
37081227 |
T |
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| Q |
101 |
ctaccccaaagggattatcgcccgtcgtagcagcaatcatgaagcggaatcaaggtaata |
160 |
Q |
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| T |
37081226 |
ctaagccagaaggattatcacccgttgtagcagcaatcatgaagcagaatcaaggtaata |
37081167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 36946773 - 36946919
Alignment:
| Q |
11 |
atgcaaaacaatcagtactttaccttgctgttgatagcaaggacaaggaagcagtcgaagtaatcatggagaactgccccagctatgttgctaccccaaa |
110 |
Q |
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| T |
36946773 |
atgcaaagaaatcagtactttaccttgcggttgaaaatggggacgaggatgcagtcaaactaatcttagagaattgccctaagaatgatgctaagccgaa |
36946872 |
T |
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| Q |
111 |
gggattatcgcccgtcgtagcagcaatcatgaagcggaatcaaggta |
157 |
Q |
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| T |
36946873 |
gggattatcgcccattgtagcagcaatcatgaaacagaatcaaggta |
36946919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 37081076 - 37081016
Alignment:
| Q |
218 |
atgaaaccaaatgattaatatcaaatggttaaataactagttctagttagtataaatagtt |
278 |
Q |
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|||||| |||||||||| |||||| |||| | |||||||||||||||||||||||||||| |
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| T |
37081076 |
atgaaatcaaatgattagtatcaagcggtttagtaactagttctagttagtataaatagtt |
37081016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 36952779 - 36952830
Alignment:
| Q |
106 |
ccaaagggattatcgcccgtcgtagcagcaatcatgaagcggaatcaaggta |
157 |
Q |
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| T |
36952779 |
ccaaaggggttatcacctgttgtagcagcaatcttgaagcggaatcaaggta |
36952830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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