View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15105_low_19 (Length: 278)
Name: NF15105_low_19
Description: NF15105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15105_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 36357540 - 36357293
Alignment:
| Q |
13 |
attattctgactccgaactcttgaagtgcctctgtttgaaagccaattgtcatgccatattttgactttctccccattcccaattctccatttgcttccc |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36357540 |
attagtctgactccgaactcttgaagtgcctctgtttgaaagccaattgtcctgccatatttttactttctccccattcccaattctccatttgcttcct |
36357441 |
T |
|
| Q |
113 |
ttttcaattacatctttagcactcatgatacttctccaagcatagctaggtgagaaacccatttttgcctccataaaacttccacgagggtgatgacggc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
36357440 |
ttttcaattacatctttagcactcatgatactcctccaagcatagctaggtgagaaacccatctttgcctccataaaacttccatgagggtgataccggc |
36357341 |
T |
|
| Q |
213 |
ttttaaagactttccccataagcgtattctctcctgttaggagcctcc |
260 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
36357340 |
ttttaaagactttccccatgagcatattctctcctgttaggagcctcc |
36357293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 35650201 - 35650441
Alignment:
| Q |
20 |
tgactccgaactcttgaagtgcctctgtttgaaagccaattgtcatgccatattttgactttctccccattcccaattctccatttgcttcccttttcaa |
119 |
Q |
| |
|
|||||| | |||||||||||||||||||||| |||||| ||||||||||| ||| |||||||||| ||||| ||||||||||||||||| || ||||||| |
|
|
| T |
35650201 |
tgactctgcactcttgaagtgcctctgtttggaagccagttgtcatgccaaattctgactttctctccatttccaattctccatttgctacctttttcaa |
35650300 |
T |
|
| Q |
120 |
ttacatctttagcactcatgatacttctccaagcatagctaggtgagaaacccatttttgcctccataaaacttccacgagggtgatgacggcttttaaa |
219 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||| || |||||||| || ||||||| ||| ||||| || ||||||| ||||||||||| |
|
|
| T |
35650301 |
ttacatctctagcactcatgatactcctccaagcatagctaggagaaaaacccatcttggcctccaaaaagcttccccgcgggtgataccggcttttaaa |
35650400 |
T |
|
| Q |
220 |
gactttccccataagcgtattctctcctgttaggagcctcc |
260 |
Q |
| |
|
|||||||||||| ||||||| ||||| || |||||||||| |
|
|
| T |
35650401 |
gactttccccattagcgtatcttctccggtcaggagcctcc |
35650441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 260
Target Start/End: Complemental strand, 40049798 - 40049558
Alignment:
| Q |
20 |
tgactccgaactcttgaagtgcctctgtttgaaagccaattgtcatgccatattttgactttctccccattcccaattctccatttgcttcccttttcaa |
119 |
Q |
| |
|
|||||| | ||||||||| ||||||||||| |||||| ||||||||||| ||| |||||||||| ||||| |||||| ||||||||| || ||||||| |
|
|
| T |
40049798 |
tgactctgcactcttgaattgcctctgttttgaagccagttgtcatgccaaattctgactttctctccatttccaatttgccatttgctacctttttcaa |
40049699 |
T |
|
| Q |
120 |
ttacatctttagcactcatgatacttctccaagcatagctaggtgagaaacccatttttgcctccataaaacttccacgagggtgatgacggcttttaaa |
219 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||| || |||||||| || ||||||| ||||||||| | ||||||| ||||||||||| |
|
|
| T |
40049698 |
ttacatctctagcactcatgatactcctccaagcatagctaggagaaaaacccatcttggcctccaaaaaacttccccttgggtgatatcggcttttaaa |
40049599 |
T |
|
| Q |
220 |
gactttccccataagcgtattctctcctgttaggagcctcc |
260 |
Q |
| |
|
|||||||||||| ||||||| || || || |||||||||| |
|
|
| T |
40049598 |
gactttccccattagcgtatcttcgccggtcaggagcctcc |
40049558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 12278548 - 12278666
Alignment:
| Q |
113 |
ttttcaattacatctttagcactcatgatacttctccaagcatagctaggtgagaaacccatttttgcctccataaaacttccacgagggtgatgacggc |
212 |
Q |
| |
|
||||||||||| || | |||||||||||||| ||||| ||||||||||| | |||| | |||||| ||||| ||||| || | ||| |||| |||| |
|
|
| T |
12278548 |
ttttcaattactactctggcactcatgatactcctccaggcatagctaggcatgtaacctacttttgcatccatgaaactccctcaaggatgatagcggc |
12278647 |
T |
|
| Q |
213 |
ttttaaagactttccccat |
231 |
Q |
| |
|
|||| || ||||||||||| |
|
|
| T |
12278648 |
ttttgaatactttccccat |
12278666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 41271421 - 41271661
Alignment:
| Q |
20 |
tgactccgaactcttgaagtgcctctgtttgaaagccaattgtcatgccatattttgactttctccccattcccaattctccatttgcttcccttttcaa |
119 |
Q |
| |
|
|||||| | ||||||||| |||||||||||| |||||| ||||||||||| ||| |||||||||| ||||| |||||| ||||||||| || ||||||| |
|
|
| T |
41271421 |
tgactctgcactcttgaattgcctctgtttggaagccagttgtcatgccaaattctgactttctctccatttccaatttgccatttgctacctttttcaa |
41271520 |
T |
|
| Q |
120 |
ttacatctttagcactcatgatacttctccaagcatagctaggtgagaaacccatttttgcctccataaaacttccacgagggtgatgacggcttttaaa |
219 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||| || |||||||| || ||||||| ||||||||| | ||||||| || |||||||| |
|
|
| T |
41271521 |
ttacatctctagcactcatgatactcctccaagcatagctaggagaaaaacccatcttggcctccaaaaaacttccccttgggtgataccgacttttaaa |
41271620 |
T |
|
| Q |
220 |
gactttccccataagcgtattctctcctgttaggagcctcc |
260 |
Q |
| |
|
|||||||||||| ||||||| || || || |||||||||| |
|
|
| T |
41271621 |
gactttccccattagcgtatcttcgccggtcaggagcctcc |
41271661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University