View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15105_low_2 (Length: 633)
Name: NF15105_low_2
Description: NF15105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15105_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 20 - 622
Target Start/End: Complemental strand, 19751836 - 19751232
Alignment:
| Q |
20 |
ttgtaacacatttgttctctatttaagggatgtaatcgcttgatgtaaatctatatttgtacttgttctaagacaatttctattttggttcgagcaggtt |
119 |
Q |
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| T |
19751836 |
ttgttacacatttgttctctatttaagggatgtaatcgcttgatgtaaatctatatttgtacttgttctaagacaatttctattttggttcgagcaggtt |
19751737 |
T |
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| Q |
120 |
ttgggagtatctgcagcttttggttttcacttcaagcagattcctagtgtgtagtatagtatcgacttcttgattaggagattattattcttcagcagc- |
218 |
Q |
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| T |
19751736 |
ttgggagtatctgcagcttttggttttcacgtcaagcagattcctagtgtgtagtatagtatcgacttcttgattgggagattattattgttcagcagcg |
19751637 |
T |
|
| Q |
219 |
--agcagcaattattctcggacattaaccaaattatttaatgttggttgggatattttttcatgtatagcagtgaattctcaccatgtttgtcaacgagg |
316 |
Q |
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| T |
19751636 |
gcagcagcaattattctcggacattaaccaaattatttagtgttggttgggatattttttcatgcatagcagtgaattctcaccatgtttgtcaacgagg |
19751537 |
T |
|
| Q |
317 |
gatatggtttcaggttctgttttgtgggaggttgaggaattactttgaattttgtggtgattggtgttaaacctgcaaaactgtaactcggtattagtta |
416 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19751536 |
gatatggtttcaggttctgttttgtaggaggttgaggaattactttgaattttgtggtgattgttgttaaacctgcaaaactgtaactcggtattagtta |
19751437 |
T |
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| Q |
417 |
acttgagcattaagctacactattactatagtgtatcgtacataaagtgagtaatctaaccatatagtagttagtgccagctgttaattggtaggaagat |
516 |
Q |
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| T |
19751436 |
acttgagc-tttagctacactattactatagtgtatggtacatagagtgagtaatctaaccatatagtagttagtgccagctgttaattggtaggaagat |
19751338 |
T |
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| Q |
517 |
ctaatagctagttagaacaatgacttctaaatatagatgaaatgtaacaaactcgacacaattcgataaacagttttcattatctcagatttcttcttct |
616 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19751337 |
ctaatagctagttagaacaatgacttctatatatagatgaaatgtaacaaactcgacacaattcgataaacagttttcattttctcagatttcttcttct |
19751238 |
T |
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| Q |
617 |
tcccta |
622 |
Q |
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|||||| |
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| T |
19751237 |
tcccta |
19751232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 500 - 616
Target Start/End: Complemental strand, 1820390 - 1820277
Alignment:
| Q |
500 |
ttaattggtaggaagatctaatagctagttagaacaatgacttctaaatatagatgaaatgtaacaaactcgacacaattcgataaacagttttcattat |
599 |
Q |
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||||||||| ||||||||||| | |||||||||| || ||||| |||||||| || ||||||||||| ||||||||||||||||| |||| ||| | |
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| T |
1820390 |
ttaattggttggaagatctaa--gttagttagaactataggttctatatatagatcaaccgtaacaaactcaacacaattcgataaaca-ttttaatttt |
1820294 |
T |
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| Q |
600 |
ctcagatttcttcttct |
616 |
Q |
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|| |||||||||||||| |
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| T |
1820293 |
ctgagatttcttcttct |
1820277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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