View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15105_low_5 (Length: 533)
Name: NF15105_low_5
Description: NF15105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15105_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 23 - 524
Target Start/End: Complemental strand, 6318304 - 6317801
Alignment:
| Q |
23 |
ttctgaactacagatgaattcaaaaaagcttgttagatt-----gttgcctgcatattcttagagtttaccattcataatccttgttgtacgtgcagctg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6318304 |
ttctgaactacagatgaattcaaaaaagcttgttagattatattgttgcctgcatattcttagagtttaccattcataatccttgttgt----gcagctg |
6318209 |
T |
|
| Q |
118 |
ttgatgacagtaaaattaaattctctccacatcatgaaactgacctacatacgtttgaatttaaggtcatatgtcactatactcccaaacttttatagcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6318208 |
ttgatgacagtaaaattaaattctctccacatgatgaaactgacctacatacgtttgaatttaaggtcatatttcactatactcccaaacttttatagcc |
6318109 |
T |
|
| Q |
218 |
tcttggcattcaaacaagatatgtcaatcactttcattttccccttcacaaaaaggacaagaagtttgacattgtacccctcttgttatgagtttttctc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6318108 |
tcttggcattcaaacaagatatgtcaatcactttcattttccccttcacaaaaaggacaagaagtttgacattgaacccctcttgttatgagtttttctc |
6318009 |
T |
|
| Q |
318 |
tcgtctgcgatcaaccttttttggtactcttaacctccataactttgtccactcccctggttttctcaagtttacataaatcatatgaccatatttcact |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6318008 |
tcgtctgcgatcaaccttttttggtactcttaacctccataactttgtccactcccctggttttctcaagtttacataaatcatatgaccatatttcact |
6317909 |
T |
|
| Q |
418 |
gatcaagtttcctcttggaacaacaacaccaaaaccag-atttagcttcactcattaatcaactcagttcttcatgatatcaaattggaagtttcctcca |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6317908 |
gatcaagtttcctcttggaacaacaacaccaaaaccagaatttagcttcactcattaatcaactcagttcttcatgatatcaaattggaagtttcctcga |
6317809 |
T |
|
| Q |
517 |
agaattat |
524 |
Q |
| |
|
|||||||| |
|
|
| T |
6317808 |
agaattat |
6317801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 487
Target Start/End: Complemental strand, 6299993 - 6299943
Alignment:
| Q |
437 |
acaacaacaccaaaaccagatttagcttcactcattaatcaactcagttct |
487 |
Q |
| |
|
||||||||||||||||||||||||||||| || || |||||||||||||| |
|
|
| T |
6299993 |
acaacaacaccaaaaccagatttagcttctcttgttgatcaactcagttct |
6299943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 240
Target Start/End: Complemental strand, 6315104 - 6314954
Alignment:
| Q |
86 |
accattcataatccttgttgtacgtgcagctgttgatgacagtaaaattaaattctctccacatcatgaaactgacc--tacatacgtttgaatttaagg |
183 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||||||||||||| |||||||| ||||| |||||| || || | ||| ||||||||||| ||| |
|
|
| T |
6315104 |
accattcataatcattgttgt----gcagttgttgatgacagtaaaaataaattctg--cacatgatgaaaatgtcccctgcatgcgtttgaatttgagg |
6315011 |
T |
|
| Q |
184 |
tcatatgtcactatactcccaaacttttatagcctcttggcattcaaacaagatatg |
240 |
Q |
| |
|
||||| || ||||| | || || || || ||| |||||| |||||||| |||||||| |
|
|
| T |
6315010 |
tcataggttactattcccctaagctgttgtagtctcttgccattcaaagaagatatg |
6314954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 319
Target Start/End: Complemental strand, 55983990 - 55983907
Alignment:
| Q |
236 |
atatgtcaatcactttcattttccccttcacaaaaaggacaagaagtttgacattgtacccctcttgttatgagtttttctctc |
319 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||||||||| ||| |||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
55983990 |
atatgtcaatcactttcattttcctcttctctaaaaggacatgaaatttgacattgaacccctcgtcttatgagtttttctctc |
55983907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 55983861 - 55983824
Alignment:
| Q |
334 |
ttttttggtactcttaacctccataactttgtccactc |
371 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
55983861 |
ttttttggtactcttaacctccacaactttgtccactc |
55983824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University