View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15105_low_6 (Length: 512)
Name: NF15105_low_6
Description: NF15105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15105_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 487
Target Start/End: Complemental strand, 22365495 - 22365026
Alignment:
| Q |
18 |
cactcactaccacacaacataaatggttttcattctatcttctctcttgatttgttcagatcatcagtttgtcgatttgaattcattgaaaaattgttga |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22365495 |
cactcactaccacacaacataaatgattttcattctatcttctctcttgatttgttcagatcatcagtttgtcgatttgaattcattgaaaaattgttga |
22365396 |
T |
|
| Q |
118 |
acttcgttatagattttttaaatttatacagttatatgttggttccaatttggactgttgatctaaaactaaaattcatgaataggaaaagaaaattaag |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22365395 |
acatcgttatagattttttaaatttatacagttatatgttagttccaatttggacttttgatctaaaactaaaattcatgaataggaaaagaaaatcaag |
22365296 |
T |
|
| Q |
218 |
ataatagagaagttgaaactgaaatttacatagattaaagtaatttacttaaggaacaataaaaagcaccatatccataattccatttgttgctgagttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22365295 |
ataatagagaagttgaaactgaaatttacatagattaaagtaatttacttaaggaacaataaaaagcaccatatccataattccatttgttgctgagttt |
22365196 |
T |
|
| Q |
318 |
gcgacatgcttcaattgtgtgtgtttcgttttctttttagtgtggcttttacattcttacaatttttccttacgaactaagaacgagagctccacctttt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22365195 |
gcgacatgcttcaattgtgtgtgtttcgttttctttttagtgtggcttttacattcttacaatttttccttacgaactaagaatgagagctccacctttt |
22365096 |
T |
|
| Q |
418 |
tggatatttctcaaagtatactatggtctatagtatcaaactattttcttgaccattgacattatcaaag |
487 |
Q |
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| T |
22365095 |
tggatatttctcaaagtatactatggtctatagtatcaaactattttcttgaccattgacattatcaaag |
22365026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 30 - 367
Target Start/End: Complemental strand, 2788754 - 2788417
Alignment:
| Q |
30 |
cacaacataaatggttttcattctatcttctctcttgatttgttcagatcatcagtttgtcgatttgaattcattgaaaaattgttgaacttcgttatag |
129 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
2788754 |
cacaacatgaatggttttcattctatcttctctcttgatttgttcagatcatcagtgtgtcgattcgaattcatttaaaaattgttgaacttcgttatag |
2788655 |
T |
|
| Q |
130 |
attttttaaatttatacagttatatgttggttccaatttggactgttgatctaaaactaaaattcatgaataggaaaagaaaattaagataatagagaag |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2788654 |
attttttaaatttatacagttatatgttggttccaatttggatttttaatctaaaactaaaattcatgaataggaaaagaaaattaagataagagagaag |
2788555 |
T |
|
| Q |
230 |
ttgaaactgaaatttacatagattaaagtaatttacttaaggaacaataaaaagcaccatatccataattccatttgttgctgagtttgcgacatgcttc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2788554 |
ttgaaactgaaatttacatagattaaagtaatttacttcaggaacaataaaaggcaccatatccataattccagttgttgctgagtttgcgacatgcttc |
2788455 |
T |
|
| Q |
330 |
aattgtgtgtgtttcgttttctttttagtgtggctttt |
367 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||| |
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| T |
2788454 |
aattgtgtgtgtttcgttttcttttaagtgtggctttt |
2788417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 428 - 487
Target Start/End: Complemental strand, 2788415 - 2788356
Alignment:
| Q |
428 |
tcaaagtatactatggtctatagtatcaaactattttcttgaccattgacattatcaaag |
487 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2788415 |
tcaaagtatactatggtctatagtatcaaactattttcttggccattgacattatcaaag |
2788356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 480
Target Start/End: Original strand, 9368764 - 9368793
Alignment:
| Q |
451 |
tatcaaactattttcttgaccattgacatt |
480 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
9368764 |
tatcaaactattttcttgaccattgacatt |
9368793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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