View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15105_low_8 (Length: 431)
Name: NF15105_low_8
Description: NF15105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15105_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 30831321 - 30830913
Alignment:
| Q |
1 |
ggaaaaattcaagaatccatcaggaacttctcttttggtaccatcagttcaagagttagctaaagatggaaagatttcaaccgttccaccaagatacatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30831321 |
ggaaaaattcaagaatccatcaggaacttctcttttggtaccatcagttcaagagttagctaaagatggaaagatttcaaccgttccaccaagatacatt |
30831222 |
T |
|
| Q |
101 |
cagcctaatcatcaagacttgattctatctgaagttgatactaaccttgaaattccagttattgatatgtataagttgcattcacaagaatttgggagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
30831221 |
cagcctaatcatcaagacttgattctatctgaagttgatactaaccttcaaattccagttattgatatgtataagttgcattcagaagaatttggaagtt |
30831122 |
T |
|
| Q |
201 |
cagaattggttaagtttcaccttgcttgcaaagattggggattctttcaggttttttctccctcctttaagcttcaatatcttaaatatatgacatatga |
300 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || ||| || |||||| ||||||||||||||||||||||||| |
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| T |
30831121 |
cagaattgcttaagtttcaccttgcttgcaaagattggggattctttcaggtctttt-tctctc-ttcaagcttaaatatcttaaatatatgacatatga |
30831024 |
T |
|
| Q |
301 |
ttttgggtttcttgattaactttattcatttacttatatataaacaaaggttgttaacatttctagtccttccttcaaaaataaaagaatttagtccagt |
400 |
Q |
| |
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||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| |||||||||||||||||| || ||||||||||| |
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| T |
30831023 |
ttttgggtttcttgattaactttatacatttatttatata--aacaaaggttgttaacatttatagtccttccttcaaaaaaaa-----tttagtccagt |
30830931 |
T |
|
| Q |
401 |
gatttgataactacatct |
418 |
Q |
| |
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|||||||||||||||||| |
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| T |
30830930 |
gatttgataactacatct |
30830913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 325
Target Start/End: Complemental strand, 30836739 - 30836422
Alignment:
| Q |
9 |
tcaagaatccatcaggaacttctcttttggtaccatcagttcaagagttagctaaagatggaaagatttcaaccgttccaccaagatacattcagcctaa |
108 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30836739 |
tcaagaacccatcaggtacttctcttttggtaccatcagttcaagagttatctaaagatggaaatatttcaaccgttccaccaagatacattcagcctaa |
30836640 |
T |
|
| Q |
109 |
tcatcaagacttgattctatctgaagttgatactaaccttgaaattccagttattgatatgtataagttgcattcacaagaatttgggagttcagaattg |
208 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
30836639 |
tcatcaagacttgattctctctgaagttgatactaaccttcaaattccagttattgatatgtataagttgcattcagaagaacttgggagttcagaattg |
30836540 |
T |
|
| Q |
209 |
gttaagtttcaccttgcttgcaaagattggggattctttcaggttttttctccctcctttaagcttcaatatcttaaatatatgacat---atgattttg |
305 |
Q |
| |
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|||||| ||||||||||||||||||||||||| ||||||||||| |||| || || ||| |||||||||||||| ||||||| ||||| ||||||||| |
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| T |
30836539 |
gttaagcttcaccttgcttgcaaagattggggtttctttcaggtctttt-tctct-cttcaagcttcaatatctcaaatataagacatctgatgattttg |
30836442 |
T |
|
| Q |
306 |
ggtttcttgattaactttat |
325 |
Q |
| |
|
|||||||| ||| ||||||| |
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| T |
30836441 |
ggtttcttaattgactttat |
30836422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 30854486 - 30854246
Alignment:
| Q |
9 |
tcaagaatccatcaggaacttctcttttggtaccatcagttcaagagttagctaaagatggaaagatttcaaccgttccaccaagatacattcagcctaa |
108 |
Q |
| |
|
||||||| || || |||||||||||| |||||||||||||||||||||| ||||| || ||| |||||||| |||||||||||||| |||||| || | |
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| T |
30854486 |
tcaagaacccctctggaacttctcttctggtaccatcagttcaagagttggctaagga---aaaaatttcaacagttccaccaagatatattcagtctca |
30854390 |
T |
|
| Q |
109 |
tcatcaagacttgattctatctgaagttgatactaaccttgaaattccagttattgatatgtataagttgcattcacaagaatttgggagttcagaattg |
208 |
Q |
| |
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|| | || ||| | | ||||| | ||| || |||||||||||||||||||||||| | || |||| ||| ||||| |||||||| ||||||| |
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| T |
30854389 |
acacgatgaattggtcatcaatgaagctaatagtatacttgaaattccagttattgatatgaagaaattgctttctttagaatatgggagtttagaattg |
30854290 |
T |
|
| Q |
209 |
gttaagtttcaccttgcttgcaaagattggggattctttcaggt |
252 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
30854289 |
tctaagcttcaccttgcttgcaaagattggggattctttcaggt |
30854246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 30841973 - 30841733
Alignment:
| Q |
9 |
tcaagaatccatcaggaacttctcttttggtaccatcagttcaagagttagctaaagatggaaagatttcaaccgttccaccaagatacattcagcctaa |
108 |
Q |
| |
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||||||| || || |||||||||||| ||||||||||||| ||||| || ||||| || |||||||||||| |||||| ||||||| |||||| || | |
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| T |
30841973 |
tcaagaacccctctggaacttctcttctggtaccatcagtccaagaattggctaagga---aaagatttcaacagttccagcaagatatattcagtctca |
30841877 |
T |
|
| Q |
109 |
tcatcaagacttgattctatctgaagttgatactaaccttgaaattccagttattgatatgtataagttgcattcacaagaatttgggagttcagaattg |
208 |
Q |
| |
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||| |||| ||| | | ||||| | ||| || |||||||||||||||||||||||| | || |||| ||| ||||| |||||||| ||||||| |
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| T |
30841876 |
acatgaagaattggtcatcaatgaagctaatagtatacttgaaattccagttattgatatgaagaaattgctttctttagaatatgggagtttagaattg |
30841777 |
T |
|
| Q |
209 |
gttaagtttcaccttgcttgcaaagattggggattctttcaggt |
252 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
30841776 |
tctaagcttcaccttgcttgcaaagattggggattcttccaggt |
30841733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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