View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15105_low_9 (Length: 407)
Name: NF15105_low_9
Description: NF15105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15105_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 1481242 - 1481632
Alignment:
| Q |
1 |
gatgccgagtttcgaagttattaataaaattctaatttatgaactaataaattctatattactttgatataagtttgattgagtgaacttatcctatatt |
100 |
Q |
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| T |
1481242 |
gatgccgagtttcgaagatattaataaaattctaatttatgaactaataaattctatattactttgatataagtttgattgagtgaacttatcctatatt |
1481341 |
T |
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| Q |
101 |
attttaatttaaaagtatctttagaaatgttaaacatgtattagcnnnnnnngaaaagaaatggtaatcatgtaacaatatcatctattctttttgtttt |
200 |
Q |
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| T |
1481342 |
attttaatttaaaagtatctttagaaatgttaaacatgtattagcaaaaaaagaaaagaaatggtaatcatgtaacaatatcatctattctttttgtttt |
1481441 |
T |
|
| Q |
201 |
taaatgttgttggatgcatattaggataattttaatcataatattctatacttattaagtttgtttgtgattttcaaatagacctgcgtcgcacgggtca |
300 |
Q |
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| T |
1481442 |
taaatgttgttggatgcatattaggataattttaatcataatattctatacttattaagtttgtttgtgattttcaaatagacccgcgtcgcacgggtca |
1481541 |
T |
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| Q |
301 |
aatcttagtaattgattggtttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttg |
391 |
Q |
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| T |
1481542 |
aatcttagtaattgattggtttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttagttg |
1481632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 49190892 - 49190959
Alignment:
| Q |
321 |
ttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttag |
388 |
Q |
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| T |
49190892 |
ttatagcacaagggtttcaaatgaattaggagctggtaatccatttgaagcacgtgttgccgtgttag |
49190959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 7314516 - 7314550
Alignment:
| Q |
56 |
atattactttgatataagtttgattgagtgaactt |
90 |
Q |
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| T |
7314516 |
atattacttttatataagtttgattgagtgaactt |
7314550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 186 - 274
Target Start/End: Complemental strand, 1850638 - 1850550
Alignment:
| Q |
186 |
tattctttttgtttttaaatgttgttggatgcatattaggataattttaatcataatattctatacttattaagtttgtttgtgatttt |
274 |
Q |
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| T |
1850638 |
tattcttttttattttaaatgttgttgaatgcatattaagataattttaataataatattgtatacttattaagtttgtttgtgatttt |
1850550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 363
Target Start/End: Complemental strand, 30475886 - 30475857
Alignment:
| Q |
334 |
gtttcaaatgaattaggagctggtaatcca |
363 |
Q |
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| T |
30475886 |
gtttcaaatgaattaggagctggtaatcca |
30475857 |
T |
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