View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15106_high_10 (Length: 254)

Name: NF15106_high_10
Description: NF15106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15106_high_10
NF15106_high_10
[»] chr3 (33 HSPs)
chr3 (9-252)||(2513582-2513825)
chr3 (166-253)||(19468230-19468318)
chr3 (196-252)||(23267849-23267905)
chr3 (130-252)||(49758590-49758713)
chr3 (130-251)||(21969331-21969453)
chr3 (130-251)||(21991767-21991889)
chr3 (130-249)||(45879549-45879669)
chr3 (193-252)||(18387114-18387173)
chr3 (130-248)||(27397899-27398018)
chr3 (177-243)||(34667267-34667334)
chr3 (166-252)||(35380179-35380266)
chr3 (196-241)||(21967212-21967257)
chr3 (196-241)||(21989648-21989693)
chr3 (196-252)||(22130902-22130959)
chr3 (200-252)||(14770954-14771006)
chr3 (196-252)||(21595309-21595365)
chr3 (193-253)||(27400232-27400292)
chr3 (193-253)||(51006006-51006066)
chr3 (130-243)||(285947-286060)
chr3 (196-243)||(9861244-9861291)
chr3 (166-252)||(13367757-13367844)
chr3 (130-252)||(29626011-29626133)
chr3 (193-252)||(30806075-30806134)
chr3 (193-243)||(24171165-24171215)
chr3 (193-250)||(6454793-6454850)
chr3 (212-253)||(20838039-20838080)
chr3 (207-251)||(7638713-7638757)
chr3 (196-252)||(17438931-17438986)
chr3 (197-249)||(19224731-19224783)
chr3 (193-253)||(22525937-22525997)
chr3 (196-252)||(41923175-41923231)
chr3 (196-252)||(47787485-47787540)
chr3 (196-228)||(52957807-52957839)
[»] chr6 (16 HSPs)
chr6 (130-252)||(23124191-23124314)
chr6 (133-252)||(14426368-14426489)
chr6 (196-252)||(13240894-13240950)
chr6 (196-247)||(26306452-26306503)
chr6 (166-252)||(31994313-31994400)
chr6 (130-222)||(11646272-11646365)
chr6 (173-252)||(17829592-17829672)
chr6 (166-252)||(9894596-9894683)
chr6 (193-251)||(30254516-30254574)
chr6 (166-226)||(4965751-4965812)
chr6 (196-252)||(17942296-17942352)
chr6 (196-252)||(20730180-20730236)
chr6 (193-252)||(30233129-30233188)
chr6 (133-195)||(14415671-14415733)
chr6 (193-243)||(28188727-28188777)
chr6 (200-249)||(30591105-30591154)
[»] chr8 (25 HSPs)
chr8 (131-252)||(11929810-11929932)
chr8 (166-252)||(11941396-11941483)
chr8 (130-253)||(15044472-15044596)
chr8 (130-252)||(13369336-13369459)
chr8 (130-229)||(45356669-45356768)
chr8 (205-252)||(12542876-12542923)
chr8 (151-252)||(12838358-12838460)
chr8 (201-252)||(4535793-4535844)
chr8 (201-252)||(42862472-42862523)
chr8 (198-251)||(16243547-16243600)
chr8 (193-237)||(2079507-2079551)
chr8 (196-252)||(9187394-9187450)
chr8 (193-252)||(23085771-23085828)
chr8 (196-252)||(30134332-30134388)
chr8 (196-252)||(32856798-32856854)
chr8 (196-252)||(41666910-41666966)
chr8 (202-252)||(24412006-24412056)
chr8 (193-243)||(26169778-26169828)
chr8 (166-242)||(29905871-29905948)
chr8 (196-252)||(32345311-32345370)
chr8 (196-252)||(32361919-32361978)
chr8 (193-242)||(45488800-45488849)
chr8 (196-251)||(13765601-13765657)
chr8 (196-228)||(28969850-28969882)
chr8 (196-252)||(39534432-39534488)
[»] chr1 (29 HSPs)
chr1 (130-254)||(12266699-12266824)
chr1 (196-252)||(13309238-13309294)
chr1 (166-252)||(13281210-13281297)
chr1 (166-247)||(8209620-8209702)
chr1 (196-252)||(36605709-36605765)
chr1 (193-252)||(42676533-42676592)
chr1 (166-235)||(898713-898783)
chr1 (166-243)||(6045041-6045119)
chr1 (193-251)||(13315378-13315436)
chr1 (130-243)||(15596703-15596817)
chr1 (198-254)||(4969007-4969063)
chr1 (208-252)||(23773554-23773598)
chr1 (193-252)||(9978291-9978350)
chr1 (161-243)||(16823789-16823872)
chr1 (130-252)||(45752584-45752707)
chr1 (130-243)||(17580038-17580152)
chr1 (133-253)||(7491560-7491680)
chr1 (200-253)||(43416075-43416128)
chr1 (196-252)||(48420321-48420377)
chr1 (131-252)||(12300839-12300961)
chr1 (198-252)||(17504358-17504412)
chr1 (204-241)||(18115750-18115787)
chr1 (196-252)||(5880974-5881030)
chr1 (196-252)||(8573850-8573905)
chr1 (196-228)||(9417199-9417231)
chr1 (196-252)||(11978018-11978074)
chr1 (166-247)||(24198906-24198985)
chr1 (212-252)||(34555283-34555323)
chr1 (166-241)||(43019735-43019811)
[»] chr7 (32 HSPs)
chr7 (166-252)||(17038301-17038388)
chr7 (193-252)||(4785646-4785705)
chr7 (193-252)||(4818646-4818705)
chr7 (130-238)||(19008620-19008727)
chr7 (166-250)||(39786335-39786420)
chr7 (196-252)||(36251530-36251586)
chr7 (130-252)||(9334466-9334589)
chr7 (196-243)||(14553689-14553736)
chr7 (202-252)||(22701633-22701683)
chr7 (166-243)||(39465561-39465639)
chr7 (130-221)||(15994820-15994912)
chr7 (196-252)||(30908438-30908494)
chr7 (193-252)||(21766382-21766441)
chr7 (162-248)||(47741265-47741351)
chr7 (207-247)||(3530996-3531036)
chr7 (196-252)||(26710368-26710424)
chr7 (196-252)||(35596376-35596432)
chr7 (166-229)||(38737213-38737277)
chr7 (166-221)||(41385928-41385984)
chr7 (201-252)||(1460418-1460469)
chr7 (196-243)||(9412449-9412496)
chr7 (201-252)||(15138015-15138065)
chr7 (196-243)||(27250555-27250602)
chr7 (193-243)||(4996109-4996159)
chr7 (193-243)||(29675029-29675079)
chr7 (168-252)||(40417330-40417413)
chr7 (210-247)||(15994428-15994465)
chr7 (197-241)||(8632272-8632316)
chr7 (200-252)||(19396876-19396928)
chr7 (196-228)||(41755568-41755600)
chr7 (182-252)||(48103017-48103084)
chr7 (196-248)||(48525757-48525809)
[»] chr2 (26 HSPs)
chr2 (130-252)||(9243846-9243969)
chr2 (166-252)||(42444370-42444457)
chr2 (196-252)||(40301797-40301853)
chr2 (131-253)||(16039110-16039233)
chr2 (193-252)||(21566032-21566091)
chr2 (193-252)||(27912893-27912952)
chr2 (168-253)||(1071323-1071409)
chr2 (166-242)||(37867431-37867508)
chr2 (152-252)||(39809261-39809362)
chr2 (166-250)||(19133124-19133215)
chr2 (169-252)||(27649131-27649215)
chr2 (193-252)||(35156099-35156158)
chr2 (193-243)||(27590813-27590863)
chr2 (199-252)||(25915377-25915430)
chr2 (196-252)||(24100516-24100572)
chr2 (196-252)||(24836473-24836529)
chr2 (196-252)||(33134201-33134257)
chr2 (182-244)||(360042-360105)
chr2 (196-243)||(15248977-15249024)
chr2 (182-252)||(24004048-24004118)
chr2 (201-247)||(22278173-22278219)
chr2 (198-247)||(40633616-40633665)
chr2 (208-252)||(3171637-3171681)
chr2 (196-252)||(9415239-9415295)
chr2 (196-252)||(31555688-31555744)
chr2 (196-252)||(38702409-38702465)
[»] chr4 (32 HSPs)
chr4 (151-252)||(26510422-26510524)
chr4 (130-242)||(2011908-2012021)
chr4 (166-249)||(53451041-53451125)
chr4 (166-243)||(47044473-47044550)
chr4 (196-249)||(34409961-34410014)
chr4 (197-252)||(34659082-34659137)
chr4 (196-252)||(6788402-6788458)
chr4 (193-252)||(20818376-20818435)
chr4 (196-243)||(24637743-24637790)
chr4 (196-243)||(32006976-32007023)
chr4 (166-252)||(52793943-52794030)
chr4 (193-252)||(54983093-54983152)
chr4 (159-252)||(34035671-34035765)
chr4 (175-252)||(36926816-36926893)
chr4 (162-243)||(37013643-37013725)
chr4 (151-243)||(143639-143732)
chr4 (200-252)||(4609208-4609260)
chr4 (200-252)||(19545423-19545475)
chr4 (196-252)||(30859547-30859603)
chr4 (196-252)||(34334766-34334822)
chr4 (196-243)||(23019573-23019620)
chr4 (196-243)||(40314812-40314859)
chr4 (196-243)||(40324888-40324935)
chr4 (193-243)||(21020668-21020718)
chr4 (130-227)||(34658975-34659073)
chr4 (193-238)||(5661923-5661968)
chr4 (196-252)||(29630084-29630141)
chr4 (151-243)||(35518891-35518984)
chr4 (196-252)||(6385240-6385296)
chr4 (172-228)||(13204574-13204630)
chr4 (196-252)||(21954687-21954743)
chr4 (196-252)||(43317447-43317503)
[»] scaffold0154 (1 HSPs)
scaffold0154 (144-253)||(32808-32918)
[»] chr5 (18 HSPs)
chr5 (166-243)||(27174968-27175046)
chr5 (144-252)||(38099003-38099112)
chr5 (171-252)||(1093612-1093694)
chr5 (166-243)||(35583394-35583472)
chr5 (196-253)||(8839668-8839725)
chr5 (196-252)||(1612169-1612225)
chr5 (193-252)||(16312810-16312869)
chr5 (166-243)||(9616427-9616505)
chr5 (193-247)||(38697168-38697222)
chr5 (196-252)||(25782166-25782222)
chr5 (196-252)||(35627424-35627480)
chr5 (196-247)||(5025488-5025539)
chr5 (193-252)||(26647023-26647082)
chr5 (193-252)||(26918607-26918666)
chr5 (193-243)||(31796431-31796481)
chr5 (197-225)||(1591311-1591339)
chr5 (196-252)||(8990164-8990220)
chr5 (196-252)||(42919137-42919193)
[»] scaffold0013 (2 HSPs)
scaffold0013 (196-252)||(101340-101396)
scaffold0013 (197-243)||(41731-41777)
[»] scaffold0526 (1 HSPs)
scaffold0526 (130-252)||(9418-9541)
[»] scaffold0128 (1 HSPs)
scaffold0128 (166-252)||(43308-43395)
[»] scaffold0734 (1 HSPs)
scaffold0734 (196-251)||(4205-4260)
[»] scaffold1017 (1 HSPs)
scaffold1017 (148-252)||(2426-2531)
[»] scaffold0196 (1 HSPs)
scaffold0196 (193-252)||(9365-9424)
[»] scaffold0118 (1 HSPs)
scaffold0118 (130-226)||(14335-14432)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 2513825 - 2513582
Alignment:
Q  9 gagtgaaatgaatgtaataaacttttgtaatagggacacatatttgaattaaaatgaagacaaaatatattagagttagaatggatgttagtttcgtcaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2513825 gagtgaaatgaatgtaataaacttttgtaatagggacacatatttgaattaaaatgaagacaaaatatattagagttagaatggatgttagtttcgtcaa 2513726  T
Q  109 aaccnnnnnnnnnnnnnnnnnaagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaactttaatacaaatagca 208  Q
    ||||                 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  2513725 aacctatatatactatatataaagaaaataatatattttggttcttttggatcgacattttctcttttcaaatttaccattgactttaatataaatagca 2513626  T
Q  209 catataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||| ||||||||||||||||||||||||||||||| ||||||||    
T  2513625 catgtaacaaatagataagagaaaattcaaatattaaaataaaa 2513582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 19468318 - 19468230
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaaa 253  Q
    |||||||||| |||  ||||| | |||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||    
T  19468318 ttttctctttccaatattaccctcaactttcaatacaaatagcacatataacaattagataagagtaaattcaaatattaaaataaaaa 19468230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 23267849 - 23267905
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  23267849 aatacaaataacacatataacaaatagataagagtaaattcaaatattaaaataaaa 23267905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 252
Target Start/End: Complemental strand, 49758713 - 49758590
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataaga 228  Q
    ||||||||| ||| |||||  |||||||| | ||| |||||| |||  ||| ||| | | |||||| || ||||||| ||||||||||||||||||||||    
T  49758713 aagaaaatagcatgttttgactcttttgggttgactttttctgtttctaaaattatcctcaactttcaaaacaaataacacatataacaaatagataaga 49758614  T
Q  229 gaaaattcaaatatttaaataaaa 252  Q
    | ||||||||||||| ||||||||    
T  49758613 gtaaattcaaatattaaaataaaa 49758590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 251
Target Start/End: Original strand, 21969331 - 21969453
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataaga 228  Q
    ||||||||||||| |||||| | |||||| | ||| |||  |||||  ||| ||||| | |||||| ||||||||||| ||| |||||||||| ||||||    
T  21969331 aagaaaataacatgttttggctattttgggttgacttttcatctttctaaaattaccctcaactttcaatacaaatagaacacataacaaatatataaga 21969430  T
Q  229 gaaaattcaaatatttaaataaa 251  Q
    | ||||||||||||| |||||||    
T  21969431 gtaaattcaaatattaaaataaa 21969453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 251
Target Start/End: Original strand, 21991767 - 21991889
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataaga 228  Q
    ||||||||||||| |||||| | |||||| | ||| |||  |||||  ||| ||||| | |||||| ||||||||||| ||| |||||||||| ||||||    
T  21991767 aagaaaataacatgttttggctattttgggttgacttttcatctttctaaaattaccctcaactttcaatacaaatagaacacataacaaatatataaga 21991866  T
Q  229 gaaaattcaaatatttaaataaa 251  Q
    | ||||||||||||| |||||||    
T  21991867 gtaaattcaaatattaaaataaa 21991889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 249
Target Start/End: Original strand, 45879549 - 45879669
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataaga 228  Q
    ||||||||| ||| |||||| | |||||  | ||| ||||||||||| ||| ||||| |  ||||| ||||||||||| | |||||||||||| || |||    
T  45879549 aagaaaatagcatgttttggctattttgtgttgactttttctctttttaaaattaccctcgactttcaatacaaatagtatatataacaaatatattaga 45879648  T
Q  229 gaaaattcaaatatttaaata 249  Q
    | ||||||||||||| |||||    
T  45879649 gtaaattcaaatattaaaata 45879669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 18387173 - 18387114
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||| ||| ||||||||||||||| ||||||| ||||| ||||||| ||||||||    
T  18387173 tttaatacatataacacatataacaaatatataagagtaaatttaaatattaaaataaaa 18387114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 248
Target Start/End: Original strand, 27397899 - 27398018
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataaga 228  Q
    ||||||||||||| |||||| | |||||| | ||   ||||||||| |||  ||||| | |||||| ||||||||||  |||||||||||||| ||||||    
T  27397899 aagaaaataacatgttttggcttttttgggttgattatttctctttccaatattaccctaaactttcaatacaaataagacatataacaaataaataaga 27397998  T
Q  229 gaaaattcaaatatttaaat 248  Q
    | ||||| ||||||| ||||    
T  27397999 gtaaatttaaatattaaaat 27398018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 34667267 - 34667334
Alignment:
Q  177 caaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    |||| ||||||| |||||| |||||||||||| |||||||||||||||||| |  |||||||||||||    
T  34667267 caaaattaccatcaactttcaatacaaatagcgcatataacaaatagataaaaataaattcaaatatt 34667334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 35380179 - 35380266
Alignment:
Q  166 ttttctcttttcaaatttaccattaactttaat-acaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||| |||| |||| ||||| | |||||| || ||||||||||||||||||||||| |||| || || |||||||||| ||||||||    
T  35380179 ttttcgctttccaaaattaccttcaactttcattacaaatagcacatataacaaataaataaaagtaagttcaaatattaaaataaaa 35380266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 21967212 - 21967257
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaata 241  Q
    |||||||||| |||||||||||||||||||| || |||||||||||    
T  21967212 aatacaaataacacatataacaaatagataaaagtaaattcaaata 21967257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 21989648 - 21989693
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaata 241  Q
    |||||||||| |||||||||||||||||||| || |||||||||||    
T  21989648 aatacaaataacacatataacaaatagataaaagtaaattcaaata 21989693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 22130959 - 22130902
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagag-aaaattcaaatatttaaataaaa 252  Q
    |||| ||||| ||||||||| ||||||||||||| |||||||||||||| ||||||||    
T  22130959 aatataaataacacatataataaatagataagagaaaaattcaaatattaaaataaaa 22130902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 14771006 - 14770954
Alignment:
Q  200 caaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||| || |||||||||||||||||||| ||||||||||||| ||| ||||    
T  14771006 caaataacatatataacaaatagataagagtaaattcaaatattaaaacaaaa 14770954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 21595365 - 21595309
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||| ||||||||||||||||  ||||| ||||||| ||||||||    
T  21595365 aatacaaataacacatgtaacaaatagataagaataaatttaaatattaaaataaaa 21595309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 27400292 - 27400232
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaaa 253  Q
    |||| |||||||| ||||| ||||||||||||||||  ||||| ||||||| |||||||||    
T  27400292 tttactacaaataacacatgtaacaaatagataagaataaatttaaatattaaaataaaaa 27400232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 51006006 - 51006066
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaaa 253  Q
    ||||||||||||| ||||||||||||||||||||||  ||||  ||||||| ||| |||||    
T  51006006 tttaatacaaataacacatataacaaatagataagaataaatgtaaatattaaaaaaaaaa 51006066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 286060 - 285947
Alignment:
Q  130 aagaaaataacatat-tttggttcttttggatcgacattttctcttttcaaatttaccattaactttaat-acaaatagcacatataacaaatagataag 227  Q
    ||||||||||||| | ||||| ||||||||   ||| |||| |||||||||| ||||| | |||||| || ||||||||||||||||||||||| ||||     
T  286060 aagaaaataacatgtgtttggatcttttgggctgacttttt-tcttttcaaaattaccctcaactttcatcacaaatagcacatataacaaataaataaa 285962  T
Q  228 agaaaattcaaatatt 243  Q
    ||  ||||||||||||    
T  285961 ag-taattcaaatatt 285947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 9861244 - 9861291
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    |||||||||| |||||||||||| |||||||||  |||||||||||||    
T  9861244 aatacaaataacacatataacaattagataagaataaattcaaatatt 9861291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 13367844 - 13367757
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||||||||| ||||| | |||||| |||||||||| || ||||||||||  |||||||| ||| | ||||||| ||| ||||    
T  13367844 ttttctcttttcaaaattaccttcaactttaaatacaaataacatatataacaaactgataagagtaaacttaaatattaaaaaaaaa 13367757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 252
Target Start/End: Complemental strand, 29626133 - 29626011
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataaga 228  Q
    |||||||||||||  ||||  ||||||||   ||| |||||||||| |||| ||| | | |||||| |||||||||| ||||||||||||||| |||| |    
T  29626133 aagaaaataacatgctttgactcttttgggctgactttttctctttccaaaattatcttcaactttcaatacaaataacacatataacaaatatataata 29626034  T
Q  229 gaaaattcaaatatttaaataaaa 252  Q
      ||| ||||||| ||||||||||    
T  29626033 ataaaatcaaata-ttaaataaaa 29626011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 30806134 - 30806075
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||||||  | |||||||||||| ||||||| ||||| ||||||| ||||||||    
T  30806134 tttaatacaaataatatatataacaaataaataagagtaaattaaaatattaaaataaaa 30806075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 24171165 - 24171215
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    ||||||||||||| ||||| ||||||||||||||||  ||||| |||||||    
T  24171165 tttaatacaaataacacatgtaacaaatagataagaataaatttaaatatt 24171215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 6454850 - 6454793
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataa 250  Q
    ||||||||||||| ||||| ||||||||| ||||||  ||||| ||||||| ||||||    
T  6454850 tttaatacaaataacacatgtaacaaatatataagaataaatttaaatattaaaataa 6454793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 20838039 - 20838080
Alignment:
Q  212 ataacaaatagataagagaaaattcaaatatttaaataaaaa 253  Q
    |||||||||||||||||| | ||||||||||||||| |||||    
T  20838039 ataacaaatagataagagtagattcaaatatttaaaaaaaaa 20838080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 251
Target Start/End: Original strand, 7638713 - 7638757
Alignment:
Q  207 cacatataacaaatagataagagaaaattcaaatatttaaataaa 251  Q
    |||||||| ||||||||||||| |||||| ||||||| |||||||    
T  7638713 cacatatagcaaatagataagaaaaaatttaaatattaaaataaa 7638757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 17438986 - 17438931
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||| ||||||||||||||||  ||||| ||||||| ||||||||    
T  17438986 aatacaaataacacatgtaacaaatagataaga-taaatttaaatattaaaataaaa 17438931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 19224731 - 19224783
Alignment:
Q  197 atacaaatagcacatataacaaatagataagagaaaattcaaatatttaaata 249  Q
    ||||||||| |||||||||||  |||||||||| ||||| ||||||| |||||    
T  19224731 atacaaatatcacatataacatgtagataagagtaaatttaaatattaaaata 19224783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 22525937 - 22525997
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaaa 253  Q
    ||||||| ||||| ||||| ||||||||||||||||  ||||| ||||||| ||| |||||    
T  22525937 tttaatagaaataacacatgtaacaaatagataagaataaatttaaatattaaaaaaaaaa 22525997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 41923175 - 41923231
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||| ||||||||||||||||  ||||| | ||||| ||||||||    
T  41923175 aatacaaataacacatgtaacaaatagataagaataaattaatatattaaaataaaa 41923231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 47787540 - 47787485
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||  ||| ||||||||||||||| ||| ||||||||||||| ||||||||    
T  47787540 aatacaaatcacacttataacaaatagata-gagtaaattcaaatattaaaataaaa 47787485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 52957839 - 52957807
Alignment:
Q  196 aatacaaatagcacatataacaaatagataaga 228  Q
    |||||||||| ||||||||||||||||||||||    
T  52957839 aatacaaataacacatataacaaatagataaga 52957807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 130 - 252
Target Start/End: Original strand, 23124191 - 23124314
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataaga 228  Q
    ||||||||||||| |||||||||||||||   ||| |||||||||| |||| ||||| |||| ||| |||||||||||||||||||||||||||||||||    
T  23124191 aagaaaataacatgttttggttcttttgggatgactttttctctttccaaaattacccttaattttcaatacaaatagcacatataacaaatagataaga 23124290  T
Q  229 gaaaattcaaatatttaaataaaa 252  Q
    | ||||||||||||| ||||||||    
T  23124291 gtaaattcaaatattgaaataaaa 23124314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 252
Target Start/End: Original strand, 14426368 - 14426489
Alignment:
Q  133 aaaataacatattttggttcttttggatcgacattttctcttttcaaat-ttaccattaacttt-aatacaaatagcacatataacaaatagataagaga 230  Q
    |||||| |||||||||  ||||||| || ||| |||||||||||||||  ||||| |||||||| |||||||||| ||||| |||||||||||||||||     
T  14426368 aaaatagcatattttgactcttttgcattgactttttctcttttcaaaaattacccttaactttcaatacaaataacacatgtaacaaatagataagagt 14426467  T
Q  231 aaattcaaatatttaaataaaa 252  Q
    ||||||| ||||| ||||||||    
T  14426468 aaattcatatattaaaataaaa 14426489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 13240950 - 13240894
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||    
T  13240950 aatacaaataacatatataacaaatagataagagtaaattcaaatattaaaataaaa 13240894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 26306503 - 26306452
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaa 247  Q
    |||||||||| || |||||||||||||||||||| |||||||||||||||||    
T  26306503 aatacaaataacaaatataacaaatagataagagtaaattcaaatatttaaa 26306452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 31994313 - 31994400
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||||||||| ||| | | |||||| ||||| |||| ||||||||||||||| |||| || ||||||||||||| ||||||||    
T  31994313 ttttctcttttcaaaattatcctcaacttttaatactaataacacatataacaaataaataaaagtaaattcaaatattaaaataaaa 31994400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 11646272 - 11646365
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatag 222  Q
    |||||||||| || |||||  || ||||| | ||| ||||||||||||||| ||||| |||| ||| |||||||||| ||||||||||||||||    
T  11646272 aagaaaataatatgttttgcctcatttgggttgactttttctcttttcaaaattacccttaaatttcaatacaaataacacatataacaaatag 11646365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 17829592 - 17829672
Alignment:
Q  173 ttttcaaatttaccattaactttaata-caaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||| ||| ||||||| |||||| ||| |||||| |||||||||||||||||||| |  ||||||||||||| ||||||||    
T  17829592 tttttaaaattaccatcaactttcataacaaataacacatataacaaatagataaaaataaattcaaatattaaaataaaa 17829672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 9894683 - 9894596
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||||  ||| ||||| | |||||| ||||||| || ||||||||| |||||||||| || ||||||||||||| ||||||||    
T  9894683 ttttctctttcaaaaattaccctcaactttcaatacaactatcacatataagaaatagataaaagtaaattcaaatattaaaataaaa 9894596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 30254574 - 30254516
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaa 251  Q
    ||||||||||||| ||||||||||||||| |||| || ||||| ||||||| |||||||    
T  30254574 tttaatacaaataacacatataacaaataaataaaagtaaatttaaatattaaaataaa 30254516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 4965812 - 4965751
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataa 226  Q
    ||||||| ||| ||| ||||| | |||||| |||||||||||||||||||||||||||||||    
T  4965812 ttttctccttttaaaattaccctcaactttcaatacaaatagcacatataacaaatagataa 4965751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 17942296 - 17942352
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| || |||||| |||||||||||||  |||||||||||| ||||||||    
T  17942296 aatacaaataacaaatataataaatagataagagtgaattcaaatattaaaataaaa 17942352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 20730180 - 20730236
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||| ||||||||||||||||  ||||| ||||||| ||||||||    
T  20730180 aatacaaataacacatgtaacaaatagataagaataaatttaaatattaaaataaaa 20730236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 30233129 - 30233188
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||||||| ||||  ||||||||||||||||  ||||| ||||||| ||||||||    
T  30233129 tttaatacaaataacacacgtaacaaatagataagaataaatttaaatattaaaataaaa 30233188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 14415671 - 14415733
Alignment:
Q  133 aaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt 195  Q
    |||||| |||||||||  ||||||| || ||| ||||||||||||||| ||||| ||||||||    
T  14415671 aaaatagcatattttgactcttttgcattgactttttctcttttcaaaattacccttaacttt 14415733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 28188777 - 28188727
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    ||||||||||||| ||||| ||||||||||||||||  ||||| |||||||    
T  28188777 tttaatacaaataacacatgtaacaaatagataagaataaatttaaatatt 28188727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 30591105 - 30591154
Alignment:
Q  200 caaatagcacatataacaaatagataagagaaaattcaaatatttaaata 249  Q
    |||||| ||||||||||||||| |||| || ||||||||||||| |||||    
T  30591105 caaataacacatataacaaataaataaaagtaaattcaaatattaaaata 30591154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 131 - 252
Target Start/End: Complemental strand, 11929932 - 11929810
Alignment:
Q  131 agaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagag 229  Q
    |||||||| ||| |||||| |||||||||  |||||||| |||||| ||| ||||| |||||||| |||||||||| |||||||||||||||||||||||    
T  11929932 agaaaatagcatgttttggctcttttggactgacattttttctttttaaaattacccttaactttcaatacaaataacacatataacaaatagataagag 11929833  T
Q  230 aaaattcaaatatttaaataaaa 252  Q
     ||||||||||||| ||||||||    
T  11929832 taaattcaaatattaaaataaaa 11929810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 11941396 - 11941483
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||||||||| ||||| | |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  11941396 ttttctcttttcaaaattaccctcaactttcaatacaaataacacatataacaaatagataagagtaaattcaaatattaaaataaaa 11941483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 253
Target Start/End: Complemental strand, 15044596 - 15044472
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataaga 228  Q
    ||||||||| ||| ||||| ||||||||| | ||| |||||| ||| | || ||||| | |||||| |||||||||| ||||||||||||||||||||||    
T  15044596 aagaaaatagcatgttttgtttcttttgggttgactttttctttttccgaaattaccctcaactttcaatacaaataacacatataacaaatagataaga 15044497  T
Q  229 gaaaattcaaatatttaaataaaaa 253  Q
      ||||||||||||| |||||||||    
T  15044496 ttaaattcaaatattaaaataaaaa 15044472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 130 - 252
Target Start/End: Complemental strand, 13369459 - 13369336
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataaga 228  Q
    ||||||||||||| |||||| |||||||     || ||||||||||||||| ||||| | |||||| |||||||||| ||||||||| ||||||||||||    
T  13369459 aagaaaataacatgttttggctcttttgagcttactttttctcttttcaaaattaccctcaactttcaatacaaataacacatataataaatagataaga 13369360  T
Q  229 gaaaattcaaatatttaaataaaa 252  Q
    | | ||||||||||| ||||||||    
T  13369359 gtacattcaaatattaaaataaaa 13369336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 229
Target Start/End: Complemental strand, 45356768 - 45356669
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaactttaa-tacaaatagcacatataacaaatagataaga 228  Q
    |||||||| |||| |||||||| |||||||| ||| |||||||||| |||| ||||| |||||||||| |||||| | ||||| ||||||||||||||||    
T  45356768 aagaaaatgacatgttttggtttttttggattgactttttctctttccaaaattacccttaactttaaatacaaaaa-cacatgtaacaaatagataaga 45356670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 12542923 - 12542876
Alignment:
Q  205 agcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  12542923 agcacatataacaaatagataagtgaaaattcaaatattaaaataaaa 12542876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 252
Target Start/End: Original strand, 12838358 - 12838460
Alignment:
Q  151 tcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaata 249  Q
    ||||||||| |||| |||||||||||||||  |||| | || ||| ||||||||||  ||||||||||||||||||| |  ||||| ||||||| |||||    
T  12838358 tcttttggaccgactttttctcttttcaaaaataccctcaattttcaatacaaataatacatataacaaatagataaaaataaatttaaatattaaaata 12838457  T
Q  250 aaa 252  Q
    |||    
T  12838458 aaa 12838460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 4535793 - 4535844
Alignment:
Q  201 aaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||| ||||||||    
T  4535793 aaataacacatataataaatagataagagtaaattcaaatattaaaataaaa 4535844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 42862472 - 42862523
Alignment:
Q  201 aaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||| ||||||||    
T  42862472 aaataacacatataacaaataaataagagtaaattcaaatattaaaataaaa 42862523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 16243547 - 16243600
Alignment:
Q  198 tacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaa 251  Q
    |||||||| ||||| ||| ||||||||||||| ||||||||||||| |||||||    
T  16243547 tacaaataacacatgtaaaaaatagataagagtaaattcaaatattaaaataaa 16243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 2079551 - 2079507
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattca 237  Q
    ||||||||||||| |||||||||||||||||||| || |||||||    
T  2079551 tttaatacaaataacacatataacaaatagataaaagtaaattca 2079507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 9187394 - 9187450
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| || |||||||||||||||||  | ||||||||||||| ||||||||    
T  9187394 aatacaaataacatatataacaaatagataaaggtaaattcaaatattaaaataaaa 9187450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 23085771 - 23085828
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||||||| ||||||  |||||||||||||||  |||||||||||| ||||||||    
T  23085771 tttaatacaaataacacata--acaaatagataagagtcaattcaaatattaaaataaaa 23085828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 30134332 - 30134388
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||||||||||||||||| | | || |||||||||| ||||||||    
T  30134332 aatacaaataacacatataacaaatagataggtgtaacttcaaatattaaaataaaa 30134388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 32856854 - 32856798
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||||||||||||| |||||||||| |  ||||| ||||||| ||||||||    
T  32856854 aatacaaatagcacatataataaatagataaaattaaatttaaatattaaaataaaa 32856798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 41666966 - 41666910
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||||||||||||  ||||||| | ||||||||||| ||||||||    
T  41666966 aatacaaataacacatataacaaatgtataagagtacattcaaatattaaaataaaa 41666910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 24412056 - 24412006
Alignment:
Q  202 aatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||| ||||||||||||||||||||| | ||||||||||||| ||| ||||    
T  24412056 aataacacatataacaaatagataagggtaaattcaaatattaaaacaaaa 24412006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 26169778 - 26169828
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    ||||||||||||| ||||| ||||||||||||||||  ||||| |||||||    
T  26169778 tttaatacaaataacacatgtaacaaatagataagaataaatttaaatatt 26169828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 29905871 - 29905948
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatat 242  Q
    |||||||||| |||| ||| | | |||||| ||||| ||||| |||||||||| ||||||||| | ||||||||||||    
T  29905871 ttttctctttccaaaattaacctcaactttcaataccaatagaacatataacatatagataagtgtaaattcaaatat 29905948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 32345370 - 32345311
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagag---aaaattcaaatatttaaataaaa 252  Q
    |||||||||||||||||||| |||||||||| ||    ||||||||||||| ||||||||    
T  32345370 aatacaaatagcacatataaaaaatagataaaagtaataaattcaaatattaaaataaaa 32345311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 32361978 - 32361919
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagag---aaaattcaaatatttaaataaaa 252  Q
    |||||||||||||||||||| |||||||||| ||    ||||||||||||| ||||||||    
T  32361978 aatacaaatagcacatataaaaaatagataaaagtaataaattcaaatattaaaataaaa 32361919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 45488800 - 45488849
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatat 242  Q
    ||||||||||||| ||||| ||||||||||||||||  ||||| ||||||    
T  45488800 tttaatacaaataacacatgtaacaaatagataagaataaatttaaatat 45488849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 13765601 - 13765657
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatt-taaataaa 251  Q
    |||||||||  ||||||||||| ||||||||||| | ||||||||||| ||||||||    
T  13765601 aatacaaattacacatataacacatagataagagtatattcaaatattataaataaa 13765657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 28969882 - 28969850
Alignment:
Q  196 aatacaaatagcacatataacaaatagataaga 228  Q
    |||||||||| ||||||||||||||||||||||    
T  28969882 aatacaaataacacatataacaaatagataaga 28969850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 39534488 - 39534432
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||| ||| ||||||||||||  ||||| ||||||| ||||||||    
T  39534488 aatacaaataacacatgtaataaatagataagaataaatttaaatattaaaataaaa 39534432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 254
Target Start/End: Original strand, 12266699 - 12266824
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataaga 228  Q
    ||||||||| |||||||||| |||||| |   ||| |||||||||||||||| |||| | |||||| |||||||||| ||||||||||||||||||||||    
T  12266699 aagaaaatatcatattttggctcttttaggctgactttttctcttttcaaatctaccctcaacttttaatacaaataacacatataacaaatagataaga 12266798  T
Q  229 gaaaattcaaatatttaaataaaaac 254  Q
    | ||| | ||||||| ||||||||||    
T  12266799 gtaaacttaaatattaaaataaaaac 12266824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 13309238 - 13309294
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  13309238 aatacaaataacacatataataaatagataagagaaaattcaaatattaaaataaaa 13309294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 13281297 - 13281210
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||| |||||||||| ||||| ||| |||| |||||||||| || |||||||||||| ||||||| ||||||||||||| ||||||||    
T  13281297 ttttatcttttcaaaattacctttatctttgaatacaaatatcatatataacaaataaataagagtaaattcaaatattaaaataaaa 13281210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 8209702 - 8209620
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaa 247  Q
    ||||||| ||| ||| || || |||||||| |||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  8209702 ttttctccttttaaaatttcccttaactttcaatacaaatagcacatataacaaatacataagaataaattcaaatatttaaa 8209620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 36605765 - 36605709
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||||||||||||||||||||| |||| |||||||| ||||||||    
T  36605765 aatacaaataacacatataacaaatagataagaggaaatgcaaatattaaaataaaa 36605709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 42676533 - 42676592
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||||||  |||||||||||||||||||| | ||||||||||||| ||||||||    
T  42676533 tttaatacaaatactacatataacaaatagataagggtaaattcaaatattaaaataaaa 42676592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 898713 - 898783
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaatt 235  Q
    |||||||||| |||| ||||| | ||| || |||||||||||||||||||||||||||||||||| |||||    
T  898713 ttttctctttccaaaattaccttcaacattcaatacaaatagcacatataacaaatagataagagtaaatt 898783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 6045119 - 6045041
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttta-atacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    ||||||||||||||| ||| ||| ||||||  |||||||||||||| |||||||||||| || || |||||||||||||    
T  6045119 ttttctcttttcaaaattatcatcaactttttatacaaatagcacacataacaaatagacaatagtaaattcaaatatt 6045041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 13315436 - 13315378
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaa 251  Q
    ||||||||||||| || |||||||||||||||||||| ||||| ||||||| |||||||    
T  13315436 tttaatacaaataacatatataacaaatagataagagtaaatttaaatattaaaataaa 13315378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 243
Target Start/End: Original strand, 15596703 - 15596817
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaactttaa-tacaaatagcacatataacaaatagataaga 228  Q
    |||||||||||  ||||| ||  |||||| | ||| ||||||||||   || ||||| | |||||||| ||||||||  |||||||||||||||||||||    
T  15596703 aagaaaataactcattttagtatttttgggttgactttttctctttcttaaattaccttcaactttaaatacaaataatacatataacaaatagataaga 15596802  T
Q  229 gaaaattcaaatatt 243  Q
    | |||||||||||||    
T  15596803 gtaaattcaaatatt 15596817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 4969063 - 4969007
Alignment:
Q  198 tacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaaac 254  Q
    ||||||||||||| |||||||||| ||||||| ||||| ||||||| ||||||||||    
T  4969063 tacaaatagcacacataacaaataaataagagtaaatttaaatattaaaataaaaac 4969007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 23773598 - 23773554
Alignment:
Q  208 acatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||    
T  23773598 acatataacaaatagataagagtaaattcaaatattaaaataaaa 23773554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 9978291 - 9978350
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||||||| ||| ||||||||||| ||||||| ||||| ||||||| ||||||||    
T  9978291 tttaatacaaataacacgtataacaaataaataagagtaaatttaaatattaaaataaaa 9978350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 16823872 - 16823789
Alignment:
Q  161 cgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    ||||||||||||||||||||  |||||| || ||| ||||||||||  |||| ||||||||||||||||  ||||| |||||||    
T  16823872 cgacattttctcttttcaaaaataccatcaattttcaatacaaataatacatgtaacaaatagataagaataaatttaaatatt 16823789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 252
Target Start/End: Original strand, 45752584 - 45752707
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataaga 228  Q
    ||||||||| ||| ||||   |||||| ||| ||| ||||||||||||||| ||||  |||||||| |||| ||||||| |||||| |||||  ||| ||    
T  45752584 aagaaaatatcatgttttacctcttttagatggactttttctcttttcaaaattactcttaactttcaatataaatagcgcatatagcaaatgaatatga 45752683  T
Q  229 gaaaattcaaatatttaaataaaa 252  Q
    | ||||| ||||||| ||||||||    
T  45752684 gtaaattaaaatattaaaataaaa 45752707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 17580152 - 17580038
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataaga 228  Q
    ||||||||||||| |||| | |||||| | | ||| |||||||||||||||  |||  |||| ||| |||||||||| || || ||||||||||||||||    
T  17580152 aagaaaataacatcttttagctcttttaggttgactttttctcttttcaaaaatactcttaattttcaatacaaataacatatgtaacaaatagataaga 17580053  T
Q  229 gaaaattcaaatatt 243  Q
      ||||| |||||||    
T  17580052 ataaatttaaatatt 17580038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 253
Target Start/End: Complemental strand, 7491680 - 7491560
Alignment:
Q  133 aaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaa 231  Q
    |||||||||| |||||| |||||||  | |   ||||||||||||||| ||||| |  ||||| |||||||||||  ||||  | ||||||||||||| |    
T  7491680 aaaataacatgttttggctcttttgtgttggttttttctcttttcaaaattaccctctactttcaatacaaatagttcataaca-aaatagataagagta 7491582  T
Q  232 aattcaaatatttaaataaaaa 253  Q
    |||||||||||| |||||||||    
T  7491581 aattcaaatattaaaataaaaa 7491560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 43416128 - 43416075
Alignment:
Q  200 caaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaaa 253  Q
    |||||| |||||||||||||| |||||||| ||||||||||||  |||||||||    
T  43416128 caaataacacatataacaaattgataagagtaaattcaaatataaaaataaaaa 43416075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 48420321 - 48420377
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||| || ||| ||||||||||||||||||| ||||||||||||| ||| ||||    
T  48420321 aatacaattaacacgtataacaaatagataagagtaaattcaaatattaaaacaaaa 48420377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 252
Target Start/End: Original strand, 12300839 - 12300961
Alignment:
Q  131 agaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagag 229  Q
    |||||||| ||| ||||| || |||||| | ||| |||| ||||||||||  |||| |  | ||| ||| |||||||||||||||||||| | |||| |     
T  12300839 agaaaatatcatgttttgatttttttgggttgactttttttcttttcaaaactaccctcgattttcaatgcaaatagcacatataacaaagatataaaaa 12300938  T
Q  230 aaaattcaaatatttaaataaaa 252  Q
     ||||||||||||| ||||||||    
T  12300939 taaattcaaatattaaaataaaa 12300961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 17504358 - 17504412
Alignment:
Q  198 tacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||| |||||||||||||||||||| |  ||| ||||||||| ||||||||    
T  17504358 tacaaataacacatataacaaatagataaaaataaactcaaatattaaaataaaa 17504412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 241
Target Start/End: Original strand, 18115750 - 18115787
Alignment:
Q  204 tagcacatataacaaatagataagagaaaattcaaata 241  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  18115750 tagcacatataataaatagataagagtaaattcaaata 18115787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 5881030 - 5880974
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||| ||||||||||||||||  ||||  ||||||| ||||||||    
T  5881030 aatacaaataacacatgtaacaaatagataagaataaatgtaaatattaaaataaaa 5880974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 8573850 - 8573905
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||| ||||||||||||||||  ||||| ||||| ||||||||||    
T  8573850 aatacaaataacacatgtaacaaatagataagaataaatttaaata-ttaaataaaa 8573905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 9417199 - 9417231
Alignment:
Q  196 aatacaaatagcacatataacaaatagataaga 228  Q
    |||||||||| ||||||||||||||||||||||    
T  9417199 aatacaaataacacatataacaaatagataaga 9417231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 11978018 - 11978074
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||| |||||||||||||| |  ||||| ||||||||||| ||||    
T  11978018 aatacaaataacacatgtaacaaatagataataataaatttaaatatttaaaaaaaa 11978074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 24198906 - 24198985
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaa 247  Q
    ||||||||||| ||| ||||   ||||||| ||||||||||  | ||||||||||||||||| || |||||||| ||||||||    
T  24198906 ttttctctttttaaaattac---taactttgaatacaaataatatatataacaaatagataaaagtaaattcaattatttaaa 24198985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 34555283 - 34555323
Alignment:
Q  212 ataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||||| ||||||||||||| ||||||||    
T  34555283 ataacaaatacataagagtaaattcaaatattaaaataaaa 34555323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 43019735 - 43019811
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaata 241  Q
    ||||||| ||||||| ||| | | |||||| ||||| |||| ||||||||| ||||||||||||| ||||| |||||    
T  43019735 ttttctcctttcaaaattatcctcaactttcaatacgaatatcacatataataaatagataagagtaaatttaaata 43019811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 17038301 - 17038388
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||||||||| |||| || |||||| ||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||    
T  17038301 ttttctcttttcaaaattacaatcaactttcaatacaaattgcacatataacaaatagataagagtaaattcaaatattaaaataaaa 17038388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 4785705 - 4785646
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||    
T  4785705 tttaatacaaatagcacatataataaatagataagagtaaattcaaatattcaaataaaa 4785646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 4818705 - 4818646
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||    
T  4818705 tttaatacaaatagcacatataataaatagataagagtaaattcaaatattcaaataaaa 4818646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 19008727 - 19008620
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataaga 228  Q
    ||||||||||||| |||||||| ||||||   ||| |||| |||||||||| ||||||| |||||| ||||||||||  ||| |||||||| ||||||||    
T  19008727 aagaaaataacatgttttggtttttttgggctgactttttatcttttcaaaattaccataaactttcaatacaaata--acacataacaaagagataaga 19008630  T
Q  229 gaaaattcaa 238  Q
    ||||||||||    
T  19008629 gaaaattcaa 19008620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 39786335 - 39786420
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataa 250  Q
    |||||||||| ||||  |||| | |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||    
T  39786335 ttttctctttccaaaactaccctcaactttcaatacaaataacacatataacaaatagataagagtaaattcaaatattaaaataa 39786420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 36251530 - 36251586
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  36251530 aatacaaataacacatataacaaatagataagagtaaattcaaatattaaaataaaa 36251586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 130 - 252
Target Start/End: Original strand, 9334466 - 9334589
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataaga 228  Q
    ||||||||||||| |||||  ||||||||   ||||||||||||||||||| ||||| | || ||| ||||||||||  | ||||||||||||||||| |    
T  9334466 aagaaaataacatgttttgactcttttgggctgacattttctcttttcaaaattaccctcaattttcaatacaaataatatatataacaaatagataaaa 9334565  T
Q  229 gaaaattcaaatatttaaataaaa 252  Q
    | | ||||||||||| ||| ||||    
T  9334566 gtagattcaaatattaaaagaaaa 9334589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 14553736 - 14553689
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||    
T  14553736 aatacaaatagcacatataacaaatagataaaagtaaattcaaatatt 14553689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 252
Target Start/End: Original strand, 22701633 - 22701683
Alignment:
Q  202 aatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||| ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  22701633 aatatcacatataacaaatagataagagtaaattcaaatattaaaataaaa 22701683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 39465639 - 39465561
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    ||||||| ||||||| ||||| | |||||| ||||||||||  ||||||||||||||||||| || |||||||||||||    
T  39465639 ttttctcctttcaaaattaccctcaactttcaatacaaataatacatataacaaatagataaaagtaaattcaaatatt 39465561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 15994912 - 15994820
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttt-tcaaatttaccattaactttaa-tacaaatagcacatataacaaata 221  Q
    ||||||||||||| |||| | |||||||| | |||||||||||||| ||||||| ||  | |||||||| ||||||||||||||||||||||||    
T  15994912 aagaaaataacatcttttagctcttttgggttgacattttctctttctcaaatt-actctcaactttaaatacaaatagcacatataacaaata 15994820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 30908438 - 30908494
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||||||| |||||||||| || ||||||||||||| ||||||||    
T  30908438 aatacaaataacacatataataaatagataaaagtaaattcaaatattaaaataaaa 30908494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 21766441 - 21766382
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||||||| ||||| ||||||||||||||||  ||||| ||||||| ||||||||    
T  21766441 tttaatacaaataacacatgtaacaaatagataagaataaatttaaatattaaaataaaa 21766382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 47741265 - 47741351
Alignment:
Q  162 gacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaat 248  Q
    ||||||||| |||||||||  ||||||||| ||| |||||||||| ||||| ||||||||||||||||  ||||| ||||||| ||||    
T  47741265 gacattttc-cttttcaaaaataccattaattttcaatacaaataacacatgtaacaaatagataagaataaatttaaatattaaaat 47741351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 3530996 - 3531036
Alignment:
Q  207 cacatataacaaatagataagagaaaattcaaatatttaaa 247  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  3530996 cacacataacaaatagataagagtaaattcaaatatttaaa 3531036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 26710424 - 26710368
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||| ||||| ||||||||||||||||||||||  ||||||||||||  ||||||||    
T  26710424 aatataaataacacatataacaaatagataagaataaattcaaatataaaaataaaa 26710368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 35596432 - 35596376
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||||||||||||||| ||||| || || ||||||| ||||||||    
T  35596432 aatacaaataacacatataacaaatagaaaagagtaagtttaaatattaaaataaaa 35596376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 38737213 - 38737277
Alignment:
Q  166 ttttctcttttcaaatttaccattaactttaat-acaaatagcacatataacaaatagataagag 229  Q
    |||||||||||| || ||||| | ||||||||  ||||||||||||||||| |||||||||||||    
T  38737213 ttttctcttttccaaattaccctcaactttaaacacaaatagcacatataataaatagataagag 38737277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 41385984 - 41385928
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaata 221  Q
    |||| |||||||||| ||||||| |||||| |||||||||| |||||||||||||||    
T  41385984 ttttatcttttcaaaattaccatcaacttttaatacaaataacacatataacaaata 41385928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 1460418 - 1460469
Alignment:
Q  201 aaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||| ||||||||||||||| |||| || ||||||||||||||||| ||||    
T  1460418 aaataacacatataacaaatatataatagtaaattcaaatatttaaacaaaa 1460469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 9412449 - 9412496
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    |||||||||| ||||||||||||||||||||||  ||||| |||||||    
T  9412449 aatacaaataacacatataacaaatagataagaataaatttaaatatt 9412496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 15138065 - 15138015
Alignment:
Q  201 aaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||| ||||||||||||||||||| || ||||||||||||| ||||||||    
T  15138065 aaatagtacatataacaaatagataa-agtaaattcaaatattaaaataaaa 15138015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 27250555 - 27250602
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    |||||||||| ||||||||||||||||||||||  ||||| |||||||    
T  27250555 aatacaaataacacatataacaaatagataagaataaatttaaatatt 27250602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 4996109 - 4996159
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    ||||||| | ||| ||||||||||||||||||||||| ||||| |||||||    
T  4996109 tttaatagagataacacatataacaaatagataagagtaaatttaaatatt 4996159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 29675029 - 29675079
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    ||||||||||||| ||||| ||||||||||||||||  ||||| |||||||    
T  29675029 tttaatacaaataacacatgtaacaaatagataagaataaatttaaatatt 29675079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 252
Target Start/End: Original strand, 40417330 - 40417413
Alignment:
Q  168 ttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||||||| ||||  | || ||| |||||||||| ||||||  ||||||||||||||| |||| |||||||| ||||||||    
T  40417330 ttctcttttcaaaattacgctcaattttcaatacaaataacacata--acaaatagataagagtaaatgcaaatattaaaataaaa 40417413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 15994465 - 15994428
Alignment:
Q  210 atataacaaatagataagagaaaattcaaatatttaaa 247  Q
    ||||||||||||||||| || |||||||||||||||||    
T  15994465 atataacaaatagataaaagtaaattcaaatatttaaa 15994428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 8632272 - 8632316
Alignment:
Q  197 atacaaatagcacatataacaaatagataagagaaaattcaaata 241  Q
    |||| |||| ||||||||||||||||||||||  |||||||||||    
T  8632272 ataccaataacacatataacaaatagataagaataaattcaaata 8632316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 19396876 - 19396928
Alignment:
Q  200 caaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||| ||||| ||||||||||||||||  ||||| ||||||| ||||||||    
T  19396876 caaataacacatgtaacaaatagataagaataaatttaaatattaaaataaaa 19396928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 41755600 - 41755568
Alignment:
Q  196 aatacaaatagcacatataacaaatagataaga 228  Q
    |||||||||| ||||||||||||||||||||||    
T  41755600 aatacaaataacacatataacaaatagataaga 41755568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 48103017 - 48103084
Alignment:
Q  182 ttaccattaactttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||| ||||||| ||||||||   ||| ||||| ||||||||||||| ||||||||||||| ||| ||||    
T  48103017 ttacccttaacttcaatacaaa---cacttataaaaaatagataagagtaaattcaaatattaaaacaaaa 48103084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 48525757 - 48525809
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaat 248  Q
    |||||||||| ||||| ||||||||||||||||  ||||| ||||||| ||||    
T  48525757 aatacaaataacacatgtaacaaatagataagaataaatttaaatattaaaat 48525809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 130 - 252
Target Start/End: Complemental strand, 9243969 - 9243846
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataaga 228  Q
    ||||||||||||| |||  |||||||||||| ||| ||||||||||||||| ||  ||| |||||| ||||||||||  ||||||||||||||||||| |    
T  9243969 aagaaaataacatgtttccgttcttttggattgactttttctcttttcaaaattgtcatcaactttcaatacaaataatacatataacaaatagataaaa 9243870  T
Q  229 gaaaattcaaatatttaaataaaa 252  Q
      ||||||||||||| ||||||||    
T  9243869 ataaattcaaatattaaaataaaa 9243846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 252
Target Start/End: Original strand, 42444370 - 42444457
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||  |||| | |||||| |||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||    
T  42444370 ttttctctttccaaaaataccttcaactttcaatacaaatagcacatataacaaataaataagagtaaatttaaatattaaaataaaa 42444457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 40301853 - 40301797
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  40301853 aatataaatagcacatatgacaaatagataagagtaaattcaaatattaaaataaaa 40301797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 253
Target Start/End: Original strand, 16039110 - 16039233
Alignment:
Q  131 agaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagag 229  Q
    |||||||||||| ||||| |||||||||   ||| ||||  ||||  ||| ||||| | |||||| |||||||||| |||||||||||||| ||||||||    
T  16039110 agaaaataacatgttttgattcttttgggctgacttttttcctttctaaaattaccctcaactttcaatacaaataacacatataacaaattgataagag 16039209  T
Q  230 aaaattcaaatatttaaataaaaa 253  Q
     | ||||||||||| |||| ||||    
T  16039210 tagattcaaatattaaaatgaaaa 16039233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 21566091 - 21566032
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||||||| ||||||||||||||| |||| || ||||||||||||| ||||||||    
T  21566091 tttaatacaaataacacatataacaaataaataatagtaaattcaaatattaaaataaaa 21566032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 27912893 - 27912952
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||||| | ||||| ||||||||||||||||| ||||||||||||| ||||||||    
T  27912893 tttaatacaaaaaccacatgtaacaaatagataagagtaaattcaaatattaaaataaaa 27912952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 253
Target Start/End: Complemental strand, 1071409 - 1071323
Alignment:
Q  168 ttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaaa 253  Q
    |||||||| |||||||| ||| || ||| |||||||||| ||||| ||||||||||||||||| | |||||||| || |||||||||    
T  1071409 ttctctttccaaatttaacatcaaatttcaatacaaataacacatgtaacaaatagataagagtagattcaaatgttaaaataaaaa 1071323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 37867431 - 37867508
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatat 242  Q
    |||||||||| |||| ||||| | |||||| |||| ||||| ||||||||||||||| ||||||| ||||||||||||    
T  37867431 ttttctctttccaaaattaccctcaactttcaataaaaataacacatataacaaataaataagagtaaattcaaatat 37867508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 252
Target Start/End: Complemental strand, 39809362 - 39809261
Alignment:
Q  152 cttttggatcgacattttctcttttcaaatttaccattaactttaa-tacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataa 250  Q
    ||||||||| ||  |||||||||| | || ||||| | ||| |||| || |||||||||||||| |||||||||||||| ||||||||||||| ||| ||    
T  39809362 cttttggattgattttttctctttcccaaattaccctcaacattaaatataaatagcacatatatcaaatagataagagtaaattcaaatattaaaaaaa 39809263  T
Q  251 aa 252  Q
    ||    
T  39809262 aa 39809261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 19133124 - 19133215
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcac------atataacaaatagataagagaaaattcaaatatttaaataa 250  Q
    ||||||||||||||| ||||||| |||||| |||||||||| |||      |||||||||||||||||||  ||||||||||||| ||||||    
T  19133124 ttttctcttttcaaaattaccatcaactttcaatacaaataacacatatatatataacaaatagataagaataaattcaaatattaaaataa 19133215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 252
Target Start/End: Original strand, 27649131 - 27649215
Alignment:
Q  169 tctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||| |||| ||||| | |||||| |||||||||||||||| ||||||||||||||||  ||||| |||| || ||||||||    
T  27649131 tctctttccaaaattaccctcaactttcaatacaaatagcacatgtaacaaatagataagaataaatttaaattttaaaataaaa 27649215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 35156099 - 35156158
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||||||| ||||| ||||||||||||||||  ||||| ||||||| ||||||||    
T  35156099 tttaatacaaataacacatgtaacaaatagataagaataaatttaaatattaaaataaaa 35156158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 27590813 - 27590863
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    ||||||||||||| ||||| |||||||||||||||| |||||| |||||||    
T  27590813 tttaatacaaataacacatgtaacaaatagataagaaaaaatttaaatatt 27590863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 25915430 - 25915377
Alignment:
Q  199 acaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||| ||||||||| ||||||||||||  ||||||||||||| ||||||||    
T  25915430 acaaataacacatataataaatagataagaataaattcaaatattaaaataaaa 25915377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 24100516 - 24100572
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||| ||||||||||||||||  ||||| ||||||| ||||||||    
T  24100516 aatacaaataacacatgtaacaaatagataagaataaatttaaatattaaaataaaa 24100572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 24836529 - 24836473
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||||||||||||||||||| ||||| |  | ||||||||||| ||||||||    
T  24836529 aatacaaatagcacatataacaaattgataaaaatatattcaaatattaaaataaaa 24836473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 33134257 - 33134201
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||||||| ||||||||||||  ||||| ||||||| ||||||||    
T  33134257 aatacaaataacacatataaaaaatagataagaataaatttaaatattaaaataaaa 33134201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 360042 - 360105
Alignment:
Q  182 ttaccattaactttaa-tacaaatagcacatataacaaatagataagagaaaattcaaatattt 244  Q
    ||||||| |||||||| |||||||||| ||||| | ||||||||||||| || |||||||||||    
T  360042 ttaccatcaactttaaatacaaatagctcatatgagaaatagataagagtaagttcaaatattt 360105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 15248977 - 15249024
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    |||||||||| ||||||||||||||||||||||  ||||| |||||||    
T  15248977 aatacaaataacacatataacaaatagataagaataaatttaaatatt 15249024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 24004048 - 24004118
Alignment:
Q  182 ttaccattaactttaa-tacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||| |||||||||| || |||||||||||| ||||||||||| |||| ||| ||||||||||||| ||||    
T  24004048 ttacccttaactttaaatataaatagcacataaaacaaatagat-agagtaaaatcaaatatttaaaaaaaa 24004118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 22278219 - 22278173
Alignment:
Q  201 aaatagcacatataacaaatagataagagaaaattcaaatatttaaa 247  Q
    ||||||||||||||| |||||||||| || |||||||||||| ||||    
T  22278219 aaatagcacatataaaaaatagataaaagtaaattcaaatatataaa 22278173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 40633665 - 40633616
Alignment:
Q  198 tacaaatagcacatataacaaatagataagagaaaattcaaatatttaaa 247  Q
    |||||||| ||||| ||||||||||||||||  ||||| |||||||||||    
T  40633665 tacaaataacacatctaacaaatagataagaataaatttaaatatttaaa 40633616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 3171681 - 3171637
Alignment:
Q  208 acatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||||||| ||||||| ||||||||||||  ||||||||    
T  3171681 acatataacaaataaataagagtaaattcaaatatgaaaataaaa 3171637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 9415295 - 9415239
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| || || ||||||||||||||||  ||||| ||||||| ||||||||    
T  9415295 aatacaaataacaaatgtaacaaatagataagaataaatttaaatattaaaataaaa 9415239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 31555744 - 31555688
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| || |||||||||||| ||||| | ||||||||||||| ||| ||||    
T  31555744 aatacaaataacatatataacaaataaataagtgtaaattcaaatattaaaacaaaa 31555688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 38702465 - 38702409
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||| | ||||||||||||||||  ||||| ||||||| ||||||||    
T  38702465 aatacaaataacacgtgtaacaaatagataagaataaatttaaatattaaaataaaa 38702409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 151 - 252
Target Start/End: Complemental strand, 26510524 - 26510422
Alignment:
Q  151 tcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaata 249  Q
    ||||||| || ||| |||||||||||||||  |||  | |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| |||||    
T  26510524 tcttttgaattgactttttctcttttcaaaactactctcaactttcaatacaaatatcacatataacaaatagataagagtaaattcaaatattaaaata 26510425  T
Q  250 aaa 252  Q
    |||    
T  26510424 aaa 26510422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 2012021 - 2011908
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataaga 228  Q
    ||||||||||||| |||||  |||||||||| ||| ||||||||||| ||| ||||| | |||||| |||||||||  ||||||||||||||| ||||||    
T  2012021 aagaaaataacatgttttgcctcttttggattgactttttctctttttaaaattaccctcaactttcaatacaaattacacatataacaaataaataaga 2011922  T
Q  229 gaaaattcaaatat 242  Q
      ||||||||||||    
T  2011921 ataaattcaaatat 2011908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 53451041 - 53451125
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaata 249  Q
    |||||||||  |||| ||||| | |||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| |||||    
T  53451041 ttttctcttcccaaaattaccctcaactttcaatacaaataacacatataacaaatagataagagtaaattcaaatattaaaata 53451125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 47044550 - 47044473
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    ||||||||||||||||| ||| | || ||| |||||||||||||||||||||||||| ||||||| |||||||||||||    
T  47044550 ttttctcttttcaaatt-accctcaattttcaatacaaatagcacatataacaaatatataagagtaaattcaaatatt 47044473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 34410014 - 34409961
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaata 249  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||| |||||    
T  34410014 aatacaaataacacatataacaaatagataagagtaaattcaaatattaaaata 34409961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 34659082 - 34659137
Alignment:
Q  197 atacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||| ||||||||||||||||||||| | ||||||||||||| ||||||||    
T  34659082 atacaaataacacatataacaaatagataagtgtaaattcaaatattgaaataaaa 34659137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 6788402 - 6788458
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||| ||||||||||||||  ||||||||||||| ||||||||||||| ||||||||    
T  6788402 aataaaaatagcacatatattaaatagataagagtaaattcaaatattaaaataaaa 6788458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 20818435 - 20818376
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||| |||||||||||| || ||||||||| ||| ||||||||||||| ||||||||    
T  20818435 tttaatataaatagcacatacaataaatagatacgagtaaattcaaatattaaaataaaa 20818376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 24637743 - 24637790
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    |||||||||| |||||| |||||||||||||||| |||||||||||||    
T  24637743 aatacaaataacacatacaacaaatagataagagtaaattcaaatatt 24637790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 32007023 - 32006976
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    |||||||||| || |||||||||||||||||||| |||||||||||||    
T  32007023 aatacaaataacatatataacaaatagataagagtaaattcaaatatt 32006976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 52794030 - 52793943
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||||||||| ||||| | |||||| |||||||||| ||||||||| |||| ||||| || | |||| |||||| ||||||||    
T  52794030 ttttctcttttcaaaattaccttcaactttcaatacaaatatcacatataataaatggataaaagtatattccaatattaaaataaaa 52793943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 54983093 - 54983152
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||| ||||||  |||||||||||||||||||||| ||||||||||||| ||| ||||    
T  54983093 tttaatgcaaataatacatataacaaatagataagagtaaattcaaatattaaaacaaaa 54983152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 252
Target Start/End: Original strand, 34035671 - 34035765
Alignment:
Q  159 atcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||| ||||||||||| |||  |||  | |||||| ||| |||||| |||||||||||||||||||||   ||||||||||||| ||||||||    
T  34035671 atcgactttttctctttttaaaactactctcaactttcaattcaaataacacatataacaaatagataaggataaattcaaatattaaaataaaa 34035765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 36926816 - 36926893
Alignment:
Q  175 ttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||| ||||||| |||||| |||||||||| ||||||||||||||| | || | |||||||||||||| ||||||||    
T  36926816 ttcaaaattaccatcaactttcaatacaaataacacatataacaaataaacaa-aaaaaattcaaatattaaaataaaa 36926893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 37013725 - 37013643
Alignment:
Q  162 gacattttctcttttcaaatttaccattaactttaa-tacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    |||||||||||||||| || ||||  | |||||||| || ||||| ||||||||||||||| ||||||| ||||| |||||||    
T  37013725 gacattttctcttttccaaattactctcaactttaaatataaataacacatataacaaatatataagagtaaatttaaatatt 37013643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 243
Target Start/End: Complemental strand, 143732 - 143639
Alignment:
Q  151 tcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    |||||||| | ||| |||||||||||||||  |||| | || ||| |||| ||||| ||||||||||||||||||||||  ||||| |||||||    
T  143732 tcttttgggttgactttttctcttttcaaaaataccctcaattttcaatataaataacacatataacaaatagataagaataaatttaaatatt 143639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 4609208 - 4609260
Alignment:
Q  200 caaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||| || |||||||||||||||||||| ||||||||||||| ||| ||||    
T  4609208 caaatatcatatataacaaatagataagagtaaattcaaatattcaaacaaaa 4609260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 19545423 - 19545475
Alignment:
Q  200 caaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||||||||| ||||| ||||||| ||||| ||||||| ||||||||    
T  19545423 caaatagcacatataagaaatatataagagtaaatttaaatattaaaataaaa 19545475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 30859603 - 30859547
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||| ||||||||||||||| |||||||||| || |||||||| |||| ||||||||    
T  30859603 aatataaatagcacatataataaatagataatagtaaattcaattattaaaataaaa 30859547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 34334766 - 34334822
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| || |||||| |||||||||| || ||||||||||||| ||||||||    
T  34334766 aatacaaataacaaatataataaatagataaaagtaaattcaaatattaaaataaaa 34334822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 23019620 - 23019573
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    |||||||||| ||||||||||||||||||||||  ||||| |||||||    
T  23019620 aatacaaataacacatataacaaatagataagaataaatttaaatatt 23019573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 40314859 - 40314812
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    |||||||||| ||||||||||||||||||||||  ||||| |||||||    
T  40314859 aatacaaataacacatataacaaatagataagaataaatttaaatatt 40314812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 40324935 - 40324888
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    |||||||||| ||||||||||||||||||||||  ||||| |||||||    
T  40324935 aatacaaataacacatataacaaatagataagaataaatttaaatatt 40324888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 21020718 - 21020668
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    ||||||||||||| ||||| ||||||||||||||||  ||||| |||||||    
T  21020718 tttaatacaaataacacatgtaacaaatagataagaataaatttaaatatt 21020668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 34658975 - 34659073
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataag 227  Q
    ||||||||||||| |||||  |||||| |||   | |||| |||||  ||| ||||||| |||||| |||||||||| ||||||||||||||| |||||    
T  34658975 aagaaaataacatgttttgactcttttagattagcgttttatctttataaaattaccatcaactttcaatacaaataacacatataacaaataaataag 34659073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 5661923 - 5661968
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaa 238  Q
    ||||||||||||| ||||| ||||||||||||||||  ||||||||    
T  5661923 tttaatacaaataacacatgtaacaaatagataagaataaattcaa 5661968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 29630141 - 29630084
Alignment:
Q  196 aatacaaatagcacatataacaaata-gataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||| ||||||||||| |||||||| | ||||||||||| ||||||||    
T  29630141 aatacaaataacacttataacaaataagataagagtagattcaaatattaaaataaaa 29630084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 35518891 - 35518984
Alignment:
Q  151 tcttttggatcgacattttctcttttcaaatttaccattaa-ctttaatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    |||||||||| ||| |||||||||||||||| |||| | ||  |||||||||||||  |  | ||||||||||||||||  ||||| |||||||    
T  35518891 tcttttggattgactttttctcttttcaaatataccgtcaatttttaatacaaataatatgtgtaacaaatagataagaataaatttaaatatt 35518984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 6385240 - 6385296
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||| | ||||| ||||||||||||||||  ||||| ||||||| ||||||||    
T  6385240 aatacaaacaacacatgtaacaaatagataagaataaatttaaatattaaaataaaa 6385296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 13204630 - 13204574
Alignment:
Q  172 cttttcaaatttaccattaactttaatacaaatagcacatataacaaatagataaga 228  Q
    |||||||||  |||| | || ||||||||||||| ||||| ||||||||||||||||    
T  13204630 cttttcaaaaataccctcaattttaatacaaataacacatgtaacaaatagataaga 13204574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 21954743 - 21954687
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||| ||||||||||||||||  ||||| ||||||| || |||||    
T  21954743 aatacaaataacacatgtaacaaatagataagaataaatttaaatattaaagtaaaa 21954687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 43317447 - 43317503
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||| ||||||||||||||||  ||||| ||||||| ||| ||||    
T  43317447 aatacaaataacacatgtaacaaatagataagaataaatttaaatattaaaacaaaa 43317503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 144 - 253
Target Start/End: Complemental strand, 32918 - 32808
Alignment:
Q  144 ttttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatat 242  Q
    |||||| |||||||| | ||  ||| ||||||  ||| ||||||| |||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||    
T  32918 ttttggctcttttgggttgatttttactctttctaaaattaccatcaactttcaatacaaataacacatataataaatagataagagtaaattcaaatat 32819  T
Q  243 ttaaataaaaa 253  Q
    | |||||||||    
T  32818 taaaataaaaa 32808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 243
Target Start/End: Original strand, 27174968 - 27175046
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    ||||||||||||||| ||||| | || ||| ||||||||||||||||||||||||||||||| || ||||| |||||||    
T  27174968 ttttctcttttcaaaattaccttcaattttcaatacaaatagcacatataacaaatagataaaagtaaatttaaatatt 27175046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 38099112 - 38099003
Alignment:
Q  144 ttttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatat 242  Q
    ||||| ||||||||||| ||| ||||||| ||||| | ||||| | |||||| ||| |||||  ||||||| | ||||||||||||| ||||||||||||    
T  38099112 ttttgattcttttggattgactttttctcctttcagaattaccctcaactttcaatgcaaatcacacatatgataaatagataagagtaaattcaaatat 38099013  T
Q  243 ttaaataaaa 252  Q
    | ||||||||    
T  38099012 taaaataaaa 38099003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 1093612 - 1093694
Alignment:
Q  171 tcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||| | |||||| || ||||||| ||||||||||||||||||| ||| ||||| ||||||| ||||||||    
T  1093612 tcttttcaaaattaccgtcaactttcaacacaaataacacatataacaaatagatatgagtaaatttaaatattaaaataaaa 1093694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 35583472 - 35583394
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    ||||||||||  ||| |||||||||| ||| |||||||||| ||||||||||||| ||||||||  |||||||||||||    
T  35583472 ttttctctttctaaaattaccattaattttcaatacaaataacacatataacaaaaagataagattaaattcaaatatt 35583394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 8839668 - 8839725
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaaa 253  Q
    |||||||||| ||||| ||||||||||||||||| ||||| ||||||| |||||||||    
T  8839668 aatacaaataacacatgtaacaaatagataagagtaaatttaaatattaaaataaaaa 8839725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 1612225 - 1612169
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||||||||||||||| ||||  ||||||||||||| ||||||||    
T  1612225 aatacaaataacacatataacaaatagacaagattaaattcaaatattaaaataaaa 1612169  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 16312810 - 16312869
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||||||||||| || ||||||||||||||||| || ||||||||||||  ||||||||    
T  16312810 tttaatacaaataacatatataacaaatagataaaagtaaattcaaatataaaaataaaa 16312869  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 9616505 - 9616427
Alignment:
Q  166 ttttctcttttcaaatttaccattaactttaa-tacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    |||||||||| | || ||||||| |||||||| |||||||| |||||||||  ||||||||| || |||||||||||||    
T  9616505 ttttctctttcctaaattaccatcaactttaaatacaaataacacatataatcaatagataaaagtaaattcaaatatt 9616427  T

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Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 38697222 - 38697168
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaa 247  Q
    ||||||||||||| ||||| ||||||||||||||||  ||||| |||||||||||    
T  38697222 tttaatacaaataacacatgtaacaaatagataagaataaatttaaatatttaaa 38697168  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 25782222 - 25782166
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||||||||||||| ||||||  ||||| ||||||| ||||||||    
T  25782222 aatacaaataacacatataacaaatatataagaataaatttaaatattaaaataaaa 25782166  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 35627480 - 35627424
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||| ||||||||||||||||  ||||| ||||||| ||||||||    
T  35627480 aatacaaataacacatgtaacaaatagataagaataaatttaaatattaaaataaaa 35627424  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 5025488 - 5025539
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaa 247  Q
    |||||||||| ||||| ||||||||||||||||  ||||| |||||||||||    
T  5025488 aatacaaataacacatgtaacaaatagataagaataaatttaaatatttaaa 5025539  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 26647023 - 26647082
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||||||  | ||||||||||||  |||||| ||||||||||||| ||||||||    
T  26647023 tttaatacaaataatatatataacaaataattaagagcaaattcaaatattaaaataaaa 26647082  T

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Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 26918607 - 26918666
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||||||  | ||||||||||||  |||||| ||||||||||||| ||||||||    
T  26918607 tttaatacaaataatatatataacaaataattaagagcaaattcaaatattaaaataaaa 26918666  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 31796481 - 31796431
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    ||||||||||||| ||||| ||||||||||||||||  ||||| |||||||    
T  31796481 tttaatacaaataacacatgtaacaaatagataagaataaatttaaatatt 31796431  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 1591311 - 1591339
Alignment:
Q  197 atacaaatagcacatataacaaatagata 225  Q
    |||||||||||||||||||||||||||||    
T  1591311 atacaaatagcacatataacaaatagata 1591339  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 8990164 - 8990220
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||| ||||||||||||||||  ||||  ||||||| ||||||||    
T  8990164 aatacaaataacacatgtaacaaatagataagaataaatataaatattaaaataaaa 8990220  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 42919193 - 42919137
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| ||||| |||||||||||||| |  ||||| ||||||| ||||||||    
T  42919193 aatacaaataacacatgtaacaaatagataaaaataaatttaaatattaaaataaaa 42919137  T

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Target: scaffold0013 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 101340 - 101396
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||| |||||||||||||||||||| || |||||||||||| |||||||||    
T  101340 aatacaaataacacatataacaaatagataatagtaaattcaaatatctaaataaaa 101396  T

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Target: scaffold0013; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 41777 - 41731
Alignment:
Q  197 atacaaatagcacatataacaaatagataagagaaaattcaaatatt 243  Q
    ||||||||| ||||||||||||||||||||||  ||||| |||||||    
T  41777 atacaaataacacatataacaaatagataagaataaatttaaatatt 41731  T

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Target: scaffold0526 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 130 - 252
Target Start/End: Complemental strand, 9541 - 9418
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataaga 228  Q
    ||||||||||||| |||||   ||||| | | ||| ||||||||||  ||| ||||  |||||||| |||||||| ||| |||||||||||||||||| |    
T  9541 aagaaaataacatgttttgccactttttggttgactttttctctttctaaaattactcttaactttcaatacaaacagcgcatataacaaatagataaaa 9442  T
Q  229 gaaaattcaaatatttaaataaaa 252  Q
    | ||||| ||||||| ||||||||    
T  9441 gtaaatttaaatattaaaataaaa 9418  T

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Target: scaffold0128 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 43395 - 43308
Alignment:
Q  166 ttttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    ||||| |||| |||| ||||||| |||||| ||| |||||| | ||||||||||||| ||||||| ||||||||||||| ||||||||    
T  43395 ttttccctttccaaaattaccataaactttcaatgcaaataacgcatataacaaataaataagagtaaattcaaatattaaaataaaa 43308  T

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Target: scaffold0734 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 4260 - 4205
Alignment:
Q  196 aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaa 251  Q
    |||||||||| ||||||||||||||||||||||  ||||| ||||||| |||||||    
T  4260 aatacaaataacacatataacaaatagataagaataaatttaaatattaaaataaa 4205  T

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Target: scaffold1017 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 252
Target Start/End: Complemental strand, 2531 - 2426
Alignment:
Q  148 ggttcttttggatcgacattttctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataagagaaaattcaaatatttaa 246  Q
    |||| |||||||| ||| ||||||| ||||||| ||||| | | || | |||||||||| |||||||||||||||||||| |  |||| |||||||| ||    
T  2531 ggttattttggattgactttttctcctttcaaaattaccctcatctctcaatacaaataacacatataacaaatagataaaaataaatacaaatattaaa 2432  T
Q  247 ataaaa 252  Q
    | ||||    
T  2431 acaaaa 2426  T

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Target: scaffold0196 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 252
Target Start/End: Complemental strand, 9424 - 9365
Alignment:
Q  193 tttaatacaaatagcacatataacaaatagataagagaaaattcaaatatttaaataaaa 252  Q
    |||||||||||||  |||| ||||||||||||||||  ||||| ||||||| ||||||||    
T  9424 tttaatacaaataatacatgtaacaaatagataagaataaatttaaatattaaaataaaa 9365  T

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Target: scaffold0118 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 14335 - 14432
Alignment:
Q  130 aagaaaataacatattttggttcttttggatcgacatttt-ctcttttcaaatttaccattaacttt-aatacaaatagcacatataacaaatagataa 226  Q
    |||||||||||||||||| ||||||| ||  | | ||||| |||||| |||| ||||| | |||||| |||||||||| ||||||| ||||||||||||    
T  14335 aagaaaataacatatttttgttctttcggg-ctagatttttctctttccaaaattaccctcaacttttaatacaaataacacatatgacaaatagataa 14432  T

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