View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15106_high_3 (Length: 417)
Name: NF15106_high_3
Description: NF15106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15106_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 400
Target Start/End: Complemental strand, 20434401 - 20434017
Alignment:
| Q |
16 |
gagattgagttgagatttggacctgatagcaagtaacagtctggaaacacctaagttcctggctaaaatcaggcaaaccaatagtatgatgaagaattct |
115 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20434401 |
gagattgagttgagatttggacctggtagcaagtaacagtctggaaacacctaagttcctggctaaaatcaggcaaaccaatagtatgatgaagaattct |
20434302 |
T |
|
| Q |
116 |
attagtcccaaaatcattagaattaggtccaccaacaatacaaatcactggcaaattctcactataagcaccagcaattgcattaatcacacttaaccca |
215 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20434301 |
attagtcccaaaatcattagaatttggtccaccaacaatacaaatcactggcaaattctcactataagcaccagcaattgcattaatcacacttaaccca |
20434202 |
T |
|
| Q |
216 |
ccaacagtaaatgtaacaacacaagctcccacacctctagaccttgcatatccatcagcagcatatccagcattaagttcgttacagcaaccgatgtttt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20434201 |
ccaacagtaaatgtaacaacacaagctcccacacctctagaccttgcatatccatcagcagcatatccagcattaagttcgttacagcaaccgatgtttt |
20434102 |
T |
|
| Q |
316 |
tcagcttcggttcagcgatcaggtggtcgagcaacgtcaagttgaagtcaccagggacggtgaagatgtcggtgataccgacttc |
400 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20434101 |
tcagcttcggttcagcgatcaagtggtcgagcaacgtcaggttgaagtcaccagggacggtgaagatgtcggtgataccgacttc |
20434017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 400
Target Start/End: Complemental strand, 5330291 - 5329907
Alignment:
| Q |
16 |
gagattgagttgagatttggacctgatagcaagtaacagtctggaaacacctaagttcctggctaaaatcaggcaaaccaatagtatgatgaagaattct |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5330291 |
gagattgagttgagatttggacctgatagcaagtaacagtctggaaacacctaagttcctggctaaaatcaggcaaaccaatagtatgatgaagaattct |
5330192 |
T |
|
| Q |
116 |
attagtcccaaaatcattagaattaggtccaccaacaatacaaatcactggcaaattctcactataagcaccagcaattgcattaatcacacttaaccca |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5330191 |
attagtcccaaaatcattagaattaggtccaccaacaatacaaatcactggcaaattctcactataagcaccagcaattgcattaatcacacttaaccca |
5330092 |
T |
|
| Q |
216 |
ccaacagtaaatgtaacaacacaagctcccacacctctagaccttgcatatccatcagcagcatatccagcattaagttcgttacagcaaccgatgtttt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
5330091 |
ccaacagtaaatgtaacaacacaagctcccacacctctagaccttgcatatccatcagcagcatatccagcattcagttcattacagcaaccgatgtttt |
5329992 |
T |
|
| Q |
316 |
tcagcttcggttcagcgatcaggtggtcgagcaacgtcaagttgaagtcaccagggacggtgaagatgtcggtgataccgacttc |
400 |
Q |
| |
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||| ||||||||||||||| ||||| |||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5329991 |
tcaacttcggttcagcgatgaggtgatcgagcaatgtaaggttgaagtcaccagggacggtgaagatgtcggtgataccgacttc |
5329907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 36 - 329
Target Start/End: Complemental strand, 25604146 - 25603853
Alignment:
| Q |
36 |
acctgatagcaagtaacagtctggaaacacctaagttcctggctaaaatcaggcaaaccaatagtatgatgaagaattctattagtcccaaaatcattag |
135 |
Q |
| |
|
|||||| ||||||||||||| || |||||||| | ||||| ||||||||||| | ||||||||||||||||||||| ||| |||||||| ||||||||| |
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| T |
25604146 |
acctgaaagcaagtaacagtttgaaaacacctcaactcctgactaaaatcaggaacaccaatagtatgatgaagaatcctactagtcccataatcattag |
25604047 |
T |
|
| Q |
136 |
aattaggtccaccaacaatacaaatcactggcaaattctcactataagcaccagcaattgcattaatcacacttaacccaccaacagtaaatgtaacaac |
235 |
Q |
| |
|
|||| |||||||||||||||||||| | |||||||||||||||||||||||||| || ||||||| ||||| |||||||||||||| || |||||||| |
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| T |
25604046 |
aattgggtccaccaacaatacaaataagcggcaaattctcactataagcaccagctatagcattaagaacactcaacccaccaacagtgaaagtaacaac |
25603947 |
T |
|
| Q |
236 |
acaagctcccacacctctagaccttgcatatccatcagcagcatatccagcattaagttcgttacagcaaccgatgtttttcagcttcggttca |
329 |
Q |
| |
|
|||||| || || || | |||| ||||| |||||||| ||||| |||||||| || |||||||||||||||||| ||||||| ||||||| |
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| T |
25603946 |
acaagcaccgacgccacgtgaccgagcataaccatcagccgcataaccagcatttagctcgttacagcaaccgatgaggttcagctccggttca |
25603853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 93 - 399
Target Start/End: Complemental strand, 25623302 - 25622996
Alignment:
| Q |
93 |
ccaatagtatgatgaagaattctattagtcccaaaatcattagaattaggtccaccaacaatacaaatcactggcaaattctcactataagcaccagcaa |
192 |
Q |
| |
|
|||||||||||||||||||| || ||| | ||| ||||||| || |||||||||||||| || ||||| | |||||||||||||||||||||||||| | |
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|
| T |
25623302 |
ccaatagtatgatgaagaatcctgttacttccataatcattggagttaggtccaccaacgatgcaaataagcggcaaattctcactataagcaccagcta |
25623203 |
T |
|
| Q |
193 |
ttgcattaatcacacttaacccaccaacagtaaatgtaacaacacaagctcccacacctctagaccttgcatatccatcagcagcatatccagcattaag |
292 |
Q |
| |
|
| ||||||| ||||| |||||||||||||| || || || ||||||||||| || || | |||| ||||| ||||| || || || || ||||| || |
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| T |
25623202 |
tagcattaagaacactcaacccaccaacagtgaaagttaccacacaagctccgacgccacatgaccgagcataaccatcggctgcgtaacctgcattgag |
25623103 |
T |
|
| Q |
293 |
ttcgttacagcaaccgatgtttttcagcttcggttcagcgatcaggtggtcgagcaacgtcaagttgaagtcaccagggacggtgaagatgtcggtgata |
392 |
Q |
| |
|
|||||||| |||||||| || || || |||||| |||| |||| |||||| | ||| | ||||||||||||||| |||| ||| ||||| |||| |
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|
| T |
25623102 |
ctcgttacaacaaccgattacattaagttttggttcatcgatgaggtagtcgagtagcgtgaggttgaagtcaccaggaacggagaaaatgtccgtgacg |
25623003 |
T |
|
| Q |
393 |
ccgactt |
399 |
Q |
| |
|
||||||| |
|
|
| T |
25623002 |
ccgactt |
25622996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 80 - 343
Target Start/End: Complemental strand, 4624941 - 4624678
Alignment:
| Q |
80 |
aaaatcaggcaaaccaatagtatgatgaagaattctattagtcccaaaatcattagaattaggtccaccaacaatacaaatcactggcaaattctcacta |
179 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||| ||| | ||||||||||||||||| ||||||||||||||||| ||||| || ||||| |
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|
| T |
4624941 |
aaaatcaggtaaaccaatagtatgatgaagaattctgttagtaccatagtcattagaattaggtcctccaacaatacaaatcaccggcaagttttcactg |
4624842 |
T |
|
| Q |
180 |
taagcaccagcaattgcattaatcacacttaacccaccaacagtaaatgtaacaacacaagctcccacacctctagaccttgcatatccatcagcagcat |
279 |
Q |
| |
|
||||| || ||||| || || | | ||| | ||||| || ||||| || |||||||| || || || || | | | ||| || || |||||||||| |
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|
| T |
4624841 |
taagctccggcaatggcgttgaggatactaagtccaccgactgtaaaagtcacaacacacgcgccaactcccttggcacgtgcgtaaccgtcagcagcat |
4624742 |
T |
|
| Q |
280 |
atccagcattaagttcgttacagcaaccgatgtttttcagcttcggttcagcgatcaggtggtc |
343 |
Q |
| |
|
|||||||||| || |||||||||||||||| || |||| ||| ||||||||||||||||| |
|
|
| T |
4624741 |
atccagcattcagctcgttacagcaaccgacaaggttaagctccggctcagcgatcaggtggtc |
4624678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 68 - 289
Target Start/End: Complemental strand, 1877789 - 1877568
Alignment:
| Q |
68 |
aagttcctggctaaaatcaggcaaaccaatagtatgatgaagaattctattagtcccaaaatcattagaattaggtccaccaacaatacaaatcactggc |
167 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||||||| ||||| | ||| | ||||||||||| ||||| || |||||||||| || || | ||| |
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|
| T |
1877789 |
aagttcctgactaaaatcaggtaaaccaatggtatgatggagaatcttgttacttccaaaatcattggaatttggggcaccaacaatgcatataattgga |
1877690 |
T |
|
| Q |
168 |
aaattctcactataagcaccagcaattgcattaatcacacttaacccaccaacagtaaatgtaacaacacaagctcccacacctctagaccttgcatatc |
267 |
Q |
| |
|
| || |||||||||| ||||||||| ||||||| | || | || |||||| |||| ||||||||||| || || ||||||||| | || ||||||| |
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|
| T |
1877689 |
agatcttcactataagaaccagcaatagcattaagaatgctaagtccgccaacattaaaagtaacaacacatgcaccaacacctctacatctagcatatc |
1877590 |
T |
|
| Q |
268 |
catcagcagcatatccagcatt |
289 |
Q |
| |
|
|||||| ||||| |||||||| |
|
|
| T |
1877589 |
catcagtggcataaccagcatt |
1877568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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