View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15106_high_5 (Length: 387)
Name: NF15106_high_5
Description: NF15106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15106_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 13908779 - 13908920
Alignment:
| Q |
17 |
actaatccagttaccaaatatatgaaacacattaaggggacacccaaactttgcaagaaaaataattggtgaaagtcgcaaaatacttgaaaccactcat |
116 |
Q |
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| T |
13908779 |
actaatccagttaccaaatctatgaaacacattaagggaacacccaaactttgcaagaaaaataattggtgaaagtcgcaaaatacttgaaaccactcat |
13908878 |
T |
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| Q |
117 |
ggaggagtctttggtaggccctacacatcataataacatagt |
158 |
Q |
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| T |
13908879 |
ggatgagtctttggtaggccctacacatcataataacatagt |
13908920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 16234380 - 16234409
Alignment:
| Q |
176 |
aaagattcatggacacacttttaaaccata |
205 |
Q |
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| T |
16234380 |
aaagattcatggacacacttttaaaccata |
16234409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 48653898 - 48653938
Alignment:
| Q |
176 |
aaagattcatggacacacttttaaaccatacatccatacac |
216 |
Q |
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| T |
48653898 |
aaagattcatggacacacttctaaaccatacacctatacac |
48653938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Original strand, 27915567 - 27915607
Alignment:
| Q |
176 |
aaagattcatggacacacttttaaaccatacatccatacac |
216 |
Q |
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| T |
27915567 |
aaagattcatggacacacttctaaaccatacacctatacac |
27915607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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