View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15106_high_6 (Length: 361)
Name: NF15106_high_6
Description: NF15106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15106_high_6 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 25669429 - 25669771
Alignment:
| Q |
19 |
gcaagtgtccactcctccaacaaatgatgagttgtatcaactacatgagcaactatttatataacatcatcctacactttgaggtagtggtgcttccaaa |
118 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
25669429 |
gcaagtgtccactcgtccaacaaatgatgagttgtatcaactacatgcgcagctatttatgtaacatcatcctacactttgaggtagtggtgcttccaga |
25669528 |
T |
|
| Q |
119 |
aactccaaagcaaactagccatacaagcatccagctctggcgtgaaacgttataacaacaaaaagaccaattttgcttccaaactagtgtcactgacaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25669529 |
aactccaaagcaaactagccatacaagcatccagttctggcgtgaaacgttataacaacaaaaagaccaattttgcttccaaactagtgtcactgacaat |
25669628 |
T |
|
| Q |
219 |
ctgttgaatgtcgttccaaaggtcggccagaatccaaacttgcattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25669629 |
ctgttgaatgtcgttccaaaggtcggccagaatccaaacttgcattgtaaatgggcaagtaagaaacatgtgagccaaatcctaatcagaagaaacacaa |
25669728 |
T |
|
| Q |
319 |
ctaacacactttatagggccttggacacctttatcctataaac |
361 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25669729 |
ctaacacactttatagggccttggacacctttatcctgtaaac |
25669771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 25827902 - 25828243
Alignment:
| Q |
19 |
gcaagtgtccactcctccaacaaatgatgagttgtatcaactacatgagcaactatttatataacatcatcctacactttgaggtagtggtgcttccaaa |
118 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||| ||||||||||| | | |||||||||||||||||||||||||||| ||||||| | |
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| T |
25827902 |
gcaagtgtccactcctccaacaaatgatgagctttatcaactacttgagcaactatctttttaacatcatcctacactttgaggtagtg-tgcttccgta |
25828000 |
T |
|
| Q |
119 |
aactccaaagcaaactagccatacaagcatccagctctggcgtgaaacgttataacaacaaaaagaccaattttgcttccaaactagtgtcactgacaat |
218 |
Q |
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|||||| || ||||||||||||||||| | |||| |||||||||||||||| ||| |||||||||| | ||||||||||||||||| | ||||||||||| |
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| T |
25828001 |
aactccgaaacaaactagccatacaagtagccagttctggcgtgaaacgttgtaaaaacaaaaagatcgattttgcttccaaactactatcactgacaat |
25828100 |
T |
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| Q |
219 |
ctgttgaatgtcgttccaaaggtcggccagaatccaaacttgcattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaa |
318 |
Q |
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|| ||||||||||||||||||| | |||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| |
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| T |
25828101 |
ctattgaatgtcgttccaaaggacagccataatccaaacttacattgtaaatgggcaagtaaaaaacatgtgagccatatcctaatcataagaaacacaa |
25828200 |
T |
|
| Q |
319 |
ctaacacactttatagggccttggacacctttatcctataaac |
361 |
Q |
| |
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| |||||||| || ||||| ||||||||||||||||| ||||| |
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| T |
25828201 |
ccaacacactctaaagggcattggacacctttatcctgtaaac |
25828243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 25472138 - 25472466
Alignment:
| Q |
19 |
gcaagtgtccactcctccaacaaatgatgagttgtatcaactacatgagcaactatttatataacatcatcctacactttgaggtagtggtgcttccaaa |
118 |
Q |
| |
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|||||||||||||||| |||||||||||||| | || ||||||| ||||||| ||| | | ||||||||| ||||| |||| || || |||||||| | | |
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| T |
25472138 |
gcaagtgtccactcctacaacaaatgatgagctttaccaactacttgagcaattatctttgtaacatcattctacattttgtggcagcggtgcttcgata |
25472237 |
T |
|
| Q |
119 |
aactccaaagcaaactagccatacaagcatccagctctggcgtgaaacgttataacaacaaaaagaccaattttgcttccaaactagtgtcactgacaat |
218 |
Q |
| |
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||||||||||||||||||||||||||| | |||| ||||| ||||||| || ||| ||||||||| | |||||||||||||| ||||||| |
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| T |
25472238 |
aactccaaagcaaactagccatacaagtagccagttctggtgtgaaacattgtaattacaaaaagatcg---------ccaaactagtgtcattgacaat |
25472328 |
T |
|
| Q |
219 |
ctgttgaatgtcgttccaaaggtcggccagaatccaaacttgcattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaa |
318 |
Q |
| |
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|| |||||||| |||||||||| | ||||||| ||||||||||| ||||||||||||||||| | ||| |||||||| |||||||| ||||||||||||| |
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| T |
25472329 |
ctattgaatgttgttccaaaggccagccagaa-ccaaacttgcaatgtaaatgggcaagtaaaagacaagtgagccaaatcctaattagaagaaacacaa |
25472427 |
T |
|
| Q |
319 |
ctaacacactttatagggccttggacacctttatcctataaac |
361 |
Q |
| |
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||||||||| |||||| || |||||||||||||| ||||| |
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| T |
25472428 |
ctaacacac----tagggcattagacacctttatcctgtaaac |
25472466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 154 - 361
Target Start/End: Original strand, 25429567 - 25429774
Alignment:
| Q |
154 |
tctggcgtgaaacgttataacaacaaaaagaccaattttgcttccaaactagtgtcactgacaatctgttgaatgtcgttccaaaggtcggccagaatcc |
253 |
Q |
| |
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|||| ||||||||||| |||||||||||||| | || || | ||||||||||||| ||||| ||||||||||||||||||||| ||| ||| ||||| |
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| T |
25429567 |
tctgccgtgaaacgttgtaacaacaaaaagatcgcttctgttgtcaaactagtgtcagtgacagtctgttgaatgtcgttccaaatgtcagcctcaatcc |
25429666 |
T |
|
| Q |
254 |
aaacttgcattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaactaacacactttatagggccttggacacctttatc |
353 |
Q |
| |
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||||||| |||| |||||| |||||| | ||| |||||||| ||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
25429667 |
aaacttggattgcaaatggcgaagtaaaagacacgtgagccaaatcttaatcagaagaaacacaactaacacactttgtagggcattggacacctttatc |
25429766 |
T |
|
| Q |
354 |
ctataaac |
361 |
Q |
| |
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|| ||||| |
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| T |
25429767 |
ctctaaac |
25429774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 154 - 361
Target Start/End: Complemental strand, 24889345 - 24889138
Alignment:
| Q |
154 |
tctggcgtgaaacgttataacaacaaaaagaccaattttgcttccaaactagtgtcactgacaatctgttgaatgtcgttccaaaggtcggccagaatcc |
253 |
Q |
| |
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|||| ||||||||||| |||||||| ||||| | || || | ||||||||||||| ||||| ||||||||||||||||||||| ||| ||| ||||| |
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|
| T |
24889345 |
tctgccgtgaaacgttgtaacaacataaagatcgcttctgttgtcaaactagtgtcagtgacagtctgttgaatgtcgttccaaatgtcagcctcaatcc |
24889246 |
T |
|
| Q |
254 |
aaacttgcattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaactaacacactttatagggccttggacacctttatc |
353 |
Q |
| |
|
||||||| |||| |||||| |||||| | ||| |||||||| ||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
24889245 |
aaacttggattgcaaatggcgaagtaaaagacacgtgagccaaatcttaatcagaagaaacacaactaacacactttgtagggtattggacacctttatc |
24889146 |
T |
|
| Q |
354 |
ctataaac |
361 |
Q |
| |
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|| ||||| |
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| T |
24889145 |
ctctaaac |
24889138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 25984073 - 25983908
Alignment:
| Q |
19 |
gcaagtgtccactcctccaacaaatgatgagttgtatcaactacatgagcaactatttatataacatcatcctacactttgaggtagtggtgcttccaaa |
118 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||| |||||| | | | | |||||||||| |||||||||||| ||||| |||||| | |
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|
| T |
25984073 |
gcaaatgtccactcttccaacaaatgatgagttgtatcaactacttgagcagttgtctctgtaacatcatctcacactttgaggttgtggtacttccata |
25983974 |
T |
|
| Q |
119 |
aactccaaagcaaactagccatacaagcatccagctctggcgtgaaacgttataacaacaaaaaga |
184 |
Q |
| |
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||||||||| ||| ||| |||| | |||| ||||||| ||||||||||||| ||| |||||||||| |
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| T |
25983973 |
aactccaaaacaagctaaccatgcgagcagccagctcaggcgtgaaacgttgtaataacaaaaaga |
25983908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 337
Target Start/End: Complemental strand, 41837475 - 41837399
Alignment:
| Q |
261 |
cattgtaaatgggcaagtaagaaacatgtgagccagatcctaatcagaagaaacacaactaacacactttatagggc |
337 |
Q |
| |
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||||| |||||||||||||| ||||||| ||| || |||| ||| ||||| ||||||||||||| ||| |||||| |
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| T |
41837475 |
cattgcaaatgggcaagtaaaaaacatgcgagtcaagtcctcatcgaaagaatcacaactaacacaatttgtagggc |
41837399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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