View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15106_low_1 (Length: 610)
Name: NF15106_low_1
Description: NF15106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15106_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 194 - 591
Target Start/End: Original strand, 19694085 - 19694482
Alignment:
| Q |
194 |
actgagtcataattttaaacataccttctgccagcaacatccatgagcctcatcgaaatagctacgcaaggaagcatacagaatgatgtaataatattaa |
293 |
Q |
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| T |
19694085 |
actgagtcatagttttaaacataccttctgccggcaacatccatgagccttaccgaaatagctatgcaaggaagcatacagaatgatgtaataatattaa |
19694184 |
T |
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| Q |
294 |
caagaaaagaagcagatattgagctgatgcctaaatttgatagaagagatcctactcctgcctgctcaagaatctgaggagcatagaatagaaatccatt |
393 |
Q |
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| T |
19694185 |
caagaaaagaagcagatattgagctgatgcctaaatttgatagaagagatcctactcctgcctgctcaagaatctgaggagcatagaatagaaatccatt |
19694284 |
T |
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| Q |
394 |
tatgccagcagcctgcaatgtgtattattgattatcagaagaaagaaataagttggtttataatcaactatcgaatgatacacagcgcaaaaaagttgta |
493 |
Q |
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| T |
19694285 |
tatgccagcagcctgcaatgtgtattattgattatcagaagaaagaaataagttggtttataatcaattatcgaatgatacacagcgcaaaaaagttgta |
19694384 |
T |
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| Q |
494 |
cctgttgaagaatttgaagtccgattccaacaattaatgcacgcttgacacctggttctaaaagagttctccactttggcccttttgcaacaacttct |
591 |
Q |
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| T |
19694385 |
cctgttgaagaatttgaagtccgattccaacaattaatgcacgcttgacacctggttctaaaagagttctccactttggcccttttgcaacgacttct |
19694482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 210 - 421
Target Start/End: Original strand, 9951203 - 9951414
Alignment:
| Q |
210 |
aaacataccttctgccagcaacatccatgagcctcatcgaaatagctacgcaaggaagcatacagaatgatgtaataatattaacaagaaaagaagcaga |
309 |
Q |
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| T |
9951203 |
aaacatacctcctaccagcaacatccatgagccttatcgcaatagctatacaagggagcatacagaatgttgtaattatatttacaagaaaagaagcaga |
9951302 |
T |
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| Q |
310 |
tattgagctgatgcctaaatttgatagaagagatcctactcctgcctgctcaagaatctgaggagcatagaatagaaatccatttatgccagcagcctgc |
409 |
Q |
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| T |
9951303 |
tattgaactgatgcctaaatttgatagaagagcccctactcctgcctgctcaagaatctgaggagcatagtatagaaatccatttatgccagcagcctgc |
9951402 |
T |
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| Q |
410 |
aatgtgtattat |
421 |
Q |
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| T |
9951403 |
aatgtggattat |
9951414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 12 - 169
Target Start/End: Original strand, 19693920 - 19694077
Alignment:
| Q |
12 |
caaaggccaaacgataggaagaagtacttgtgagtatacaaattaagttaatctactggcataagtacttgtgaagttgtatcggagattttatagaaac |
111 |
Q |
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| T |
19693920 |
caaaggccaaaagataggaaaaagtacttgtaaacatacaaattaagctaatctactggcataagtacttgtgaaattgtatgggagagtttatagaaac |
19694019 |
T |
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| Q |
112 |
aacttattacatgtttataactggtgttttcagcttactttcataaaaactgaaatag |
169 |
Q |
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| T |
19694020 |
aacttattacatgttaataactggtgttttcagcttactttcacaaaaactgaaatag |
19694077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 489 - 578
Target Start/End: Original strand, 9951542 - 9951631
Alignment:
| Q |
489 |
ttgtacctgttgaagaatttgaagtccgattccaacaattaatgcacgcttgacacctggttctaaaagagttctccactttggcccttt |
578 |
Q |
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| T |
9951542 |
ttgtacctgttgaagaatttgaagtcctattccaacaatcaatgcacgcttgactccaggttctagaagagctctccattttggaccttt |
9951631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 7674734 - 7674684
Alignment:
| Q |
102 |
ttatagaaacaacttattacatgtttataactggtgttttcagcttactttca |
154 |
Q |
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| T |
7674734 |
ttatggaaacaacttatgacatgtttataa--ggtgttttcagcttattttca |
7674684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 232 - 414
Target Start/End: Complemental strand, 30891413 - 30891231
Alignment:
| Q |
232 |
atccatgagcctcatcgaaatagctacgcaaggaagcatacagaatgatgtaataatattaacaagaaaagaagcagatattgagctgatgcctaaattt |
331 |
Q |
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| T |
30891413 |
atccatcaacctcatggaaatagctatacaaggaagcatgcagaatgttgttacgacatttacaagtaaagaagaagacgctgaactaatgcccagattg |
30891314 |
T |
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| Q |
332 |
gatagaagagatcctactcctgcctgctcaagaatctgaggagcatagaatagaaatccatttatgccagcagcctgcaatgt |
414 |
Q |
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| T |
30891313 |
gacaaaagtgctccaactcctgcttgatcaagtatttgtggagcatagaatataaatccatttataccagaagcctgcaatgt |
30891231 |
T |
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