View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15106_low_10 (Length: 304)

Name: NF15106_low_10
Description: NF15106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15106_low_10
NF15106_low_10
[»] chr7 (1 HSPs)
chr7 (141-297)||(39939253-39939409)
[»] chr2 (5 HSPs)
chr2 (169-297)||(9810193-9810321)
chr2 (169-255)||(16249261-16249347)
chr2 (172-254)||(45623979-45624061)
chr2 (95-133)||(217607-217645)
chr2 (145-177)||(9810324-9810356)
[»] chr3 (3 HSPs)
chr3 (169-258)||(52623476-52623565)
chr3 (181-247)||(42101128-42101194)
chr3 (145-177)||(52623441-52623473)
[»] chr4 (1 HSPs)
chr4 (156-255)||(31887950-31888049)
[»] chr8 (1 HSPs)
chr8 (170-254)||(34579398-34579482)
[»] chr6 (1 HSPs)
chr6 (175-223)||(15484710-15484758)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 141 - 297
Target Start/End: Original strand, 39939253 - 39939409
Alignment:
Q  141 gagaaaatataagctgacacccttttgtttgtaccaccctatgtggcatgggtatcttggtaattttacctcaaaactacaaccactctttaatccactg 240  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39939253 gagaaaatataagttgacacccttttgtttgtaccaccctatgtggcatgggtatcttggtaattttacctcaaaattacaaccactctttaatccactg 39939352  T
Q  241 cttctctctcataaccacaatctgtatcctcttctctctcgcaacctcttcatctca 297  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||    
T  39939353 cttctctctcataaccacaatatgtatcctcttctctctcgcaaccccttcttctca 39939409  T

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Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 169 - 297
Target Start/End: Complemental strand, 9810321 - 9810193
Alignment:
Q  169 ttgtaccaccctatgtggcatgggtatcttggtaattttacctcaaaactacaaccactctttaatccactgcttctctctcataaccacaatctgtatc 268  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9810321 ttgtaccatcctatgtggtatgggtatcttggtaattttacctcaaaactacaaccactctttaatccactgcttctctctcataaccacaatctgtatc 9810222  T
Q  269 ctcttctctctcgcaacctcttcatctca 297  Q
    ||||||||||||||||||||||| |||||    
T  9810221 ctcttctctctcgcaacctcttcttctca 9810193  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 169 - 255
Target Start/End: Complemental strand, 16249347 - 16249261
Alignment:
Q  169 ttgtaccaccctatgtggcatgggtatcttggtaattttacctcaaaactacaaccactctttaatccactgcttctctctcataac 255  Q
    |||||||||||||||||||||||| ||||  ||||||| |||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  16249347 ttgtaccaccctatgtggcatgggcatctaagtaatttcacctcaaaaccacacccactctttaatccactacttctctctcataac 16249261  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 172 - 254
Target Start/End: Complemental strand, 45624061 - 45623979
Alignment:
Q  172 taccaccctatgtggcatgggtatcttggtaattttacctcaaaactacaaccactctttaatccactgcttctctctcataa 254  Q
    ||||||||||||||||||||| ||||  ||||||| |||||||||| ||| | ||||||||||||||| ||||||||| ||||    
T  45624061 taccaccctatgtggcatgggcatctaagtaatttcacctcaaaaccacacctactctttaatccactacttctctctaataa 45623979  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 217645 - 217607
Alignment:
Q  95 gtacggaccttgcaagttctaatatcatttcaacgtaat 133  Q
    |||||||||||||||||||||||||||||||||||||||    
T  217645 gtacggaccttgcaagttctaatatcatttcaacgtaat 217607  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 177
Target Start/End: Complemental strand, 9810356 - 9810324
Alignment:
Q  145 aaatataagctgacacccttttgtttgtaccac 177  Q
    ||||||||| |||||||||||||||||||||||    
T  9810356 aaatataagttgacacccttttgtttgtaccac 9810324  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 52623476 - 52623565
Alignment:
Q  169 ttgtaccaccctatgtggcatgggtatcttggtaattttacctcaaaactacaaccactctttaatccactgcttctctctcataaccac 258  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  52623476 ttgtaccatcctatgtggtatgggtatcttggtaattttacctcaaaactacaaccactctttaatccactgcttgtctctcataaccac 52623565  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 42101194 - 42101128
Alignment:
Q  181 atgtggcatgggtatcttggtaattttacctcaaaactacaaccactctttaatccactgcttctct 247  Q
    |||||| |||| |||||||||||||| |||||||||| ||||||  ||||| ||||||| |||||||    
T  42101194 atgtggtatggatatcttggtaatttcacctcaaaaccacaacctttctttcatccactacttctct 42101128  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 52623441 - 52623473
Alignment:
Q  145 aaatataagctgacacccttttgtttgtaccac 177  Q
    ||||||||| |||||||||||||||||||||||    
T  52623441 aaatataagttgacacccttttgtttgtaccac 52623473  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 156 - 255
Target Start/End: Original strand, 31887950 - 31888049
Alignment:
Q  156 gacacccttttgtttgtaccaccctatgtggcatgggtatcttggtaattttacctcaaaactacaaccactctttaatccactgcttctctctcataac 255  Q
    ||||||||||| ||||||||||||||||||||||||| ||||  ||||||| |||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  31887950 gacacccttttatttgtaccaccctatgtggcatgggcatctaagtaatttcacctcaaaaccacacccactctttaatccactacttctctctcataac 31888049  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 254
Target Start/End: Complemental strand, 34579482 - 34579398
Alignment:
Q  170 tgtaccaccctatgtggcatgggtatcttggtaattttacctcaaaactacaaccactctttaatccactgcttctctctcataa 254  Q
    ||||||| ||||||||||||||| ||||  ||| ||| |||||||||| |||   ||||||||||||||| ||||| ||| ||||    
T  34579482 tgtaccatcctatgtggcatgggcatctaagtagtttcacctcaaaaccacacatactctttaatccactacttctttctaataa 34579398  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 15484710 - 15484758
Alignment:
Q  175 caccctatgtggcatgggtatcttggtaattttacctcaaaactacaac 223  Q
    |||||||||| |||||||  |||||||||||| |||||||||| |||||    
T  15484710 caccctatgtagcatgggcttcttggtaatttcacctcaaaaccacaac 15484758  T

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