View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15106_low_11 (Length: 300)
Name: NF15106_low_11
Description: NF15106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15106_low_11 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 53 - 300
Target Start/End: Complemental strand, 35769873 - 35769626
Alignment:
| Q |
53 |
agaaagcaatcacattcttacatgaattcatttatactataattacctgaactccgtcccaaagcttttgaaggttgctataaggcatgcaaagctctac |
152 |
Q |
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| T |
35769873 |
agaaagcaatcacattcttacatgaattcatttatactataattacctgaactccgtcccaaagcttttgaaggttgctataaggcatgcaaagctctac |
35769774 |
T |
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| Q |
153 |
aagcaagttagcatcgaattttaatggcaaagacttcagacagtatctatgccactcaaggtacctcaatttgtcagacaatgagtccagaccttcagga |
252 |
Q |
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| T |
35769773 |
aagcaagttagcatcgaattttaatggcaaagacttcagacagtatctatgccactcaaggtacctcaatttgtcagacaatgagtccagaccttcagga |
35769674 |
T |
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| Q |
253 |
agatatatattacttgtcccgttgtacttcccataatagaatttaaga |
300 |
Q |
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| T |
35769673 |
agatatatattacttgtcccgttgtacttcccataatagaatttaaga |
35769626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 23404413 - 23404474
Alignment:
| Q |
96 |
tacctgaactccgtcccaaagcttttgaaggttgctataaggcatgcaaagctctacaagca |
157 |
Q |
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| T |
23404413 |
tacctgaactccatcccagagctttttaagcttgctttgagccatgcaaagctctacaagca |
23404474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 23386042 - 23386103
Alignment:
| Q |
96 |
tacctgaactccgtcccaaagcttttgaaggttgctataaggcatgcaaagctctacaagca |
157 |
Q |
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| T |
23386042 |
tacctgaactccatcccagagctttttaagcttgctttgattcatgcaaagctctacaagca |
23386103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 23472208 - 23472269
Alignment:
| Q |
96 |
tacctgaactccgtcccaaagcttttgaaggttgctataaggcatgcaaagctctacaagca |
157 |
Q |
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|||||||||||| ||||| ||||||| ||| ||||||| || |||| |||||||||||||| |
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| T |
23472208 |
tacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagca |
23472269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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