View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15106_low_13 (Length: 242)
Name: NF15106_low_13
Description: NF15106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15106_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 97 - 220
Target Start/End: Original strand, 217897 - 218020
Alignment:
| Q |
97 |
atgaagtggtttagttagctaatgaatcaattaagtcgtccaattcattaactactatagaaatattatgatacgtttatcaaatatactagtattaaat |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
217897 |
atgaagtggtttagttagctaatgaatcaattaagtcgtccaattcattaactactatagaaatattatgatacgtttatcaaatatactagtattaaat |
217996 |
T |
|
| Q |
197 |
atgtaagtacgtgttttaattgaa |
220 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
217997 |
atgtaagtccgtgttttaattgaa |
218020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 217793 - 217871
Alignment:
| Q |
1 |
tttggctttgcatat--cccttacagaaatcaaataaggattaaaattgaataaatttcgtgtaggaataaaagtctta |
77 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
217793 |
tttggctttgcatattgcccttacagaaatcaaataaggattaaaattgaataaatttcgtgtaggaattaaagtctta |
217871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University