View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15106_low_2 (Length: 471)
Name: NF15106_low_2
Description: NF15106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15106_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 16 - 467
Target Start/End: Complemental strand, 3436065 - 3435614
Alignment:
| Q |
16 |
atttttagaacgaaaggcaccatcctcattattatcttgcaaattaaattcttgttcccggaacttgtcctcctccatccattcctccgtcatctcattc |
115 |
Q |
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| T |
3436065 |
atttttagaacgaaaggcaccatcctcattattatcttgcaaattaaattcttgttcccggaacttgtcctcctccatccattcctccgtcatctcattc |
3435966 |
T |
|
| Q |
116 |
accatattttctacatcattattcacaacaaaaacaacatgtacttccgctttttcactttcatcacaaatcgaagcatcctcaaacaaacaagcatcct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3435965 |
accatattttctacatcattattcacaacaaaaacaacatgtacttccgctttttcactttcatcacaaatcgaagcatcctcaaacaaacaagcatcct |
3435866 |
T |
|
| Q |
216 |
cgcctaatgagaatccccattcctccattattttaatattcaccaaatcatcatcaaccaacaaatcagcttcgtcattaataacctctagggatgaagt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3435865 |
cgcctaatgagaatccccattcctccattattttaatattcaccaaatcatcatcaaccaacaaatcagcttcgtcattaataatctctagggatgaagt |
3435766 |
T |
|
| Q |
316 |
tgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcagttatctaccctcaacaatcgaccaaaatcaaaagcacataatctnnnnnnn |
415 |
Q |
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| T |
3435765 |
tgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcaattatctaccctcaacaatcgaccaaaatcaaaagcacataatctaaaaaat |
3435666 |
T |
|
| Q |
416 |
nttccattccatgcttgcaaagaaactccataaattcgaatccgtgcacctc |
467 |
Q |
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| T |
3435665 |
ttcccattccatgcttgcaaagaaactccgtaaattcgaatccgtgaacctc |
3435614 |
T |
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Back To:
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Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 82 - 408
Target Start/End: Original strand, 17964044 - 17964370
Alignment:
| Q |
82 |
gtcctcctccatccattcctccgtcatctcattcaccatattttctacatcattattcacaacaaaaacaacatgtacttccgctttttcactttcatca |
181 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||| || || |||| | || |||| |||| | ||| || |
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| T |
17964044 |
gtcctcctccatccattcctccgacatctcattcaccaaattatctacgtcattattcacaactaagtcaccatgatcctctgcttcttcattatcacca |
17964143 |
T |
|
| Q |
182 |
caaatcgaagcatcctcaaacaaacaagcatcctcgcctaatgagaatccccattcctccattattttaatattcaccaaatcatcatcaaccaacaaat |
281 |
Q |
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||| || | |||||||||| ||||||||||||||||| || | || ||| | ||||| | ||||||||||||| |||| |||||||||||||||||| |
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| T |
17964144 |
caacccggatcatcctcaaataaacaagcatcctcgccgaacggaaaacccaaatcctctacaattttaatattcatcaaagcatcatcaaccaacaaat |
17964243 |
T |
|
| Q |
282 |
cagcttcgtcattaataacctctagggatgaagttgccaataaaatacgaacataatcaaaccattctctagcaaccgtgcagttatctaccctcaacaa |
381 |
Q |
| |
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| || ||| | || |||||||| | ||| |||| || ||||||||||||| | |||||| ||| ||||||| ||||||||| |||| |||| |||| |
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| T |
17964244 |
ctgcgtcggcttttataacctccaaggaagaagctggcaataaaatacgagcgtaatcatacctttctctataaaccgtgcaactatccacccgtaacat |
17964343 |
T |
|
| Q |
382 |
tcgaccaaaatcaaaagcacataatct |
408 |
Q |
| |
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||||| ||||||||||||||||||||| |
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|
| T |
17964344 |
tcgactaaaatcaaaagcacataatct |
17964370 |
T |
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