View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15106_low_3 (Length: 425)
Name: NF15106_low_3
Description: NF15106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15106_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 48291547 - 48291147
Alignment:
| Q |
1 |
gaaaaggtagcttcaatgtaaatcaagatatttaaatttattgtagttgtttagtttaataaaatgtttttgtcaaatttgtacnnnnnnnnnnnnnnng |
100 |
Q |
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| T |
48291547 |
gaaaaggtagcttcaatgtaaatcaagatatttaaatttattgtagttgtttagattaataaaatgtttttgtcaaatttgtacaaacaaaaaaa----g |
48291452 |
T |
|
| Q |
101 |
agttttgtcaaaccattatcttagcagacacccaatattaaatactgtattttagttgaattgctgcagagctcagtcttgttgtttcttcaaataataa |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48291451 |
agttttgtcaaaccattatcttagcagacacacaatattaaatactgtattttagttgaattgctgcagagctcagtcttgttgtttcttcaaataataa |
48291352 |
T |
|
| Q |
201 |
ttaaaatatggattatgtcttctagtgattatactagaattattacagaaatatgtatttaacaagtactttataaattacagtacaccctatgtgnnnn |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
48291351 |
ttaaaatatggattatgtcttctagtgattatactagaattattacagaaatatgtattcaacaagtactttataaattacagtacaccctatttgtttt |
48291252 |
T |
|
| Q |
301 |
nnngttgcacaaattattattataccctatgtaatgtagtattactagtctgtgacaagnnnnnnncattttaatgtagctatttaattaaataatgagg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
48291251 |
tttgttgcacaaattattattataccctatgtaatgtagtattactagtctgtgacaagaaaaaaacattttaatgtagctatttaattaaataatgagg |
48291152 |
T |
|
| Q |
401 |
gagct |
405 |
Q |
| |
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||||| |
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| T |
48291151 |
gagct |
48291147 |
T |
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