View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15107_high_3 (Length: 240)
Name: NF15107_high_3
Description: NF15107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15107_high_3 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 36312783 - 36312544
Alignment:
| Q |
1 |
acctgaaggtttgttggagaaagtaactgctgatgatgttaacattggtttgggctatgtttgtgtgagaaatcgcatcggggaggaatcctatgaagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36312783 |
acctgaaggtttgttggagaaagtaactgctgatgatgttaacattggtttgggctatgtttgtgtgagaaatcgcatcggggaggaatcctatgaagaa |
36312684 |
T |
|
| Q |
101 |
gctagaaatgaagagcataagttgtttgagtctcactcacttctttctaagattgacaaatccattgttggtattcttgttttggctcagaagcttgttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36312683 |
gctagaaatgaagagcataagttgtttgagtctcactcacttctttctaagattgacaaatccattgttggtattcctgttttggctcagaagcttgttc |
36312584 |
T |
|
| Q |
201 |
atgtgcaagctatgattatttcaaaaactttgcctgagat |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36312583 |
atgtgcaagctatgattatttcaaaaactttgcctgagat |
36312544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 36290299 - 36290061
Alignment:
| Q |
2 |
cctgaaggtttgttggagaaagtaactgctgatgatgttaacattggtttgggctatgtttgtgtgagaaatcgcatcggggaggaatcctatgaagaag |
101 |
Q |
| |
|
|||||||| ||||||||||| || || ||||||||||||||||| ||| | || ||||| |||||| |||| || || || || || |||||||||| | |
|
|
| T |
36290299 |
cctgaaggattgttggagaaggttaccgctgatgatgttaacatcggtctaggttatgtctgtgtgcgaaaccgaattggagatgagacctatgaagatg |
36290200 |
T |
|
| Q |
102 |
ctagaaatgaagagcataagttgtttgagtctcactcacttctttctaagattgacaaatccattgttggtattcttgttttggctcagaagcttgttca |
201 |
Q |
| |
|
||||| ||||| | ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
36290199 |
ctagactggaagaagaaaagctgtttgagtctcactcacttctttctaagattgacaaaaccattgttggtattcctgttttagctcagaagcttgttca |
36290100 |
T |
|
| Q |
202 |
tgtgcaagctatgattatttcaaaaactttgcctgagat |
240 |
Q |
| |
|
|| |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
36290099 |
ggttcaagctatgattatctcaaaaactttgccagagat |
36290061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University