View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15107_low_1 (Length: 568)
Name: NF15107_low_1
Description: NF15107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15107_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 4 - 551
Target Start/End: Complemental strand, 5890580 - 5890033
Alignment:
| Q |
4 |
atgtcgaagaaaattcactagcagatgctcctcaagaaaataccgatataataacagctccaaccgataatcgctcttccattgaagcttccatcaactc |
103 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5890580 |
atgtcgaaccaaattcactagcagatgctcctcaagaaaataccgatataataacagctccaaccgataatcactcttccattgaagcttccatcaactc |
5890481 |
T |
|
| Q |
104 |
actagctgataaaaatatagtggaacatgacactcattttcaagagactaatttctctgaaatagaatcaaagtcaacgcgtgcttctgatgagcaatct |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5890480 |
actagctgataaaaatatagtggaacatgacactcattttcaagagactaatttctctgaaatagaatcaaagtcaacgcgtgcttctgatgagcaatct |
5890381 |
T |
|
| Q |
204 |
ataggacaagatgaacatcttctcacagatgattcaatttcaacaccaaaagaagaaacagttcatgaaatagaagaaaaccacctaggagccataactt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5890380 |
ataggacaagatgaacatcttctcacagatgattcaatttcaacaccaaaagaagaaacagttcatgaaatagaagaaaaccacctaggagccataactt |
5890281 |
T |
|
| Q |
304 |
cagattctgaacttgaagctttagaagatatacaagatggtggttcaactgttactgctaacggcgatgttgatcataatcttatggaactctcaacatc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5890280 |
cagattctgaacttgaagctttagaagatatacaagatggtggttcaactgttactgctaacggcgatgttgatcataatcttatggaactctcaacatc |
5890181 |
T |
|
| Q |
404 |
ctcttctgtaacagaagatttgcagattgaccctaaaggttgtttatatgcatgctcatgtttatttggttttcgcgctaaagtgtgattaaaattatga |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5890180 |
ctcttctgtaacagaagatttgcagattgaccctaaaggttgtttatatgcatgctcatgtttatttggttttcgcgctaaagtgtgattaaaattatga |
5890081 |
T |
|
| Q |
504 |
tatatgtattgtgtcctgtatgtgattagttattgaattagttctaac |
551 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
5890080 |
tatatgtattgtgtcttgtatgtgattagttattgaattaattctaac |
5890033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University