View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15108_high_11 (Length: 352)
Name: NF15108_high_11
Description: NF15108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15108_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 4393592 - 4393918
Alignment:
| Q |
17 |
aacaaaaccctaattcactttctcaaatttctgctactgtaccctcatcttcttcatcttcctctgagaaatctccaccaaaagaattaatacctgccaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4393592 |
aacaaaaccctaattcactttctcaaatttctgctactgtaccctcatcttcttcatcttcctctgagaaatctccaccaaaagaattaatacctgccaa |
4393691 |
T |
|
| Q |
117 |
agtattttcccttggtttccctaacatcaatgatgttgtgcctaattctccaactgcttctgtgaatcaaaaccaaacatattttcagactcaaaatgtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4393692 |
agtattttcccttggtttccctaacatcaatgatgttgtgcctaattctccaactgcttctgtgaatcaaaaccaaacatattttcagactcaaaatgtt |
4393791 |
T |
|
| Q |
217 |
actacccttcttccaccaccacaagtaactgcaccaactaccgagactttcttcttcccggtgcaacatcatggacaaggaatagtgcttcctaacaatg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4393792 |
actacccttcttccaccaccacaagtaactgcaccaactactgagactttcttcttcccggtgcaacatcatggacaaggaatagtgcttcctaataatg |
4393891 |
T |
|
| Q |
317 |
ttacatcacaagggttttgcttctctg |
343 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
4393892 |
ttacatcacaagggttttgcttctctg |
4393918 |
T |
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