View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15108_high_2 (Length: 636)
Name: NF15108_high_2
Description: NF15108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15108_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 240 - 621
Target Start/End: Original strand, 56319651 - 56320032
Alignment:
| Q |
240 |
tttttaagtgaataaagatcaatgcttccatccgagccaactctcagtgaataaatatagttcgttactaactactattcattttagaggagccaaatca |
339 |
Q |
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| T |
56319651 |
tttttaagtgaataaagatcaatgactccatccgagccaactctcagtgaataaatatagttcgttactaactactattcattttagaggagccaaatca |
56319750 |
T |
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| Q |
340 |
atggtagatatatactcctttgatttgctaagttcttcaacaacagtcattcatatattttcaccgacctctcagtaaaatgttacttactagtgcaatt |
439 |
Q |
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| T |
56319751 |
atggtagatatatactcctttgatttgctaagttcttcaacaacagtcattcatatattttcaccgacctctcagtaaaatgttacttactagtgcaatt |
56319850 |
T |
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| Q |
440 |
aaaaagtaactagcacagaaagttacatgcaaattagatcctgctatctcgactagttagcatgaacttttctaacaccacaaagtggtacggcgttgct |
539 |
Q |
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| T |
56319851 |
aaaaagtaactagcacagaatgttacatgcaaattagatcctgctatctcgactagttagcatgaacttttctaacaccacaaagtggtacggcgctgct |
56319950 |
T |
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| Q |
540 |
ttgatttagattgttgatttgaaagaaaacgctacaatatgggatttgtttgttctaagatacataacatgaacatatttat |
621 |
Q |
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| T |
56319951 |
ttgatttagattgttgatttgaaagaaaacgctacaatatgggatttgtttgttataagatacataacatgaacatatttat |
56320032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 56318901 - 56319146
Alignment:
| Q |
1 |
aagtaatagtctattattcgtgacatttaatcccagcaaaatttgaatttagtctctcttttt--gttgtagatagataaaatgacaataatcattagaa |
98 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
56318901 |
aagtaatagtctattattcgtgacatttaatcccaacaaaatttgaatttagtctttttttttttgttgtagatagataaaatgacaataatcattagaa |
56319000 |
T |
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| Q |
99 |
attcactggaattagaac-tcgatgatcacatcgtctcatttgtggactattatatactaagattaggtcatttggtttgaatnnnnnnnnttaaaagta |
197 |
Q |
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|||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
56319001 |
attcacaggaattagaacctcgatgatcacatcgtctgatttgtggactattatatactaatattaggtcatttggtttgaataaaaaaaattaaaagta |
56319100 |
T |
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| Q |
198 |
taaacagtagaacgaacgctagccgcatatatataaatatagtttt |
243 |
Q |
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| T |
56319101 |
taaacagtagaacgaacgctagccgcatatatataaataaagtttt |
56319146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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