View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15108_high_9 (Length: 385)
Name: NF15108_high_9
Description: NF15108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15108_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 46045075 - 46044778
Alignment:
| Q |
17 |
cataggataaaaatatgttgcgaagagcagcaaccaatgcatattcatggtggtgggttagccacatcaggacaaaacaatcaaaatggctggaacaaag |
116 |
Q |
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| T |
46045075 |
cataggataaaaatatgttgcgaagagcagcaaccaatgcatattcatggtggtgggttagccacatcaggacaaaacaatcaaaatggctggaacaaag |
46044976 |
T |
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| Q |
117 |
tctccaaggtatgttttttgctacgtaaaatttcatcatatatggtttgaatatcatttttatgtctgctaacgttgtaatccattgtcaatggttttat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46044975 |
tctccaaggtatgttttttgctacgtaaaatttcatcatatatggtttgaatatcatttttatgtctgctaacgttgtaatccattgtcaatggttttat |
46044876 |
T |
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| Q |
217 |
ttttattgcgggtttgaacctgcgtctctcatcatatcaaatgttccggctattaccatttgagttgtatttacgggacaatattttcattcttttat |
314 |
Q |
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| T |
46044875 |
ttttattgcgggtttgaacctgcgtctctcatcatatcaaatgttccggctattaccatttaagttgtatttacttgacaatattttcattcttttat |
46044778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 306 - 367
Target Start/End: Complemental strand, 46042529 - 46042468
Alignment:
| Q |
306 |
ttcttttattagttgtttaccattttcttagtagtacatgatatacatctatataacagaat |
367 |
Q |
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| T |
46042529 |
ttcttttattagttgtttaccattttcttagtagaacatgatatacatctatataacagaat |
46042468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 27973511 - 27973600
Alignment:
| Q |
43 |
gcagcaaccaatgcatattcatggtggtgggttagccacatcaggacaaaacaatcaaaatggctggaacaaagtctccaaggtatgttt |
132 |
Q |
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| T |
27973511 |
gcagcaagtaatgcatattcatggtggtgggccagccacattaggacaaagcaatcaaaatggttggatcaatgtctccaaggtatgttt |
27973600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 13751253 - 13751163
Alignment:
| Q |
25 |
aaaaatatgttgcgaagagcagcaaccaatgcatattcatggtggtgggttagccacatcaggacaaaacaatcaaaatggctggaacaaa |
115 |
Q |
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| T |
13751253 |
aaaaaaatgttgcagagagcagctagcaatgcatattcatggtggtgggctagtcacgtcagaacaaagcaatcaaaatggatggagcaaa |
13751163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 28754667 - 28754572
Alignment:
| Q |
31 |
atgttgcgaagagcagcaaccaatgcatattcatggtggtgggttagccacatcaggacaaaacaatcaaaatggctggaacaaagtctccaaggt |
126 |
Q |
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||||||| |||||| |||| |||||| |||||||||||||||| |||||||| || ||||| |||||||||||| ||||||||| ||||||||| |
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| T |
28754667 |
atgttgcaaagagctgcaagcaatgcttattcatggtggtgggccagccacattagaacaaagcaatcaaaatggatggaacaaaacctccaaggt |
28754572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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