View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15108_low_1 (Length: 723)

Name: NF15108_low_1
Description: NF15108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15108_low_1
NF15108_low_1
[»] chr4 (26 HSPs)
chr4 (171-620)||(19315008-19315446)
chr4 (1-128)||(19314843-19314970)
chr4 (620-705)||(19316995-19317080)
chr4 (39-113)||(19328499-19328573)
chr4 (174-255)||(34259931-34260013)
chr4 (620-698)||(43990365-43990443)
chr4 (171-252)||(11063977-11064058)
chr4 (544-609)||(16006889-16006954)
chr4 (171-251)||(5234360-5234440)
chr4 (171-252)||(22071600-22071681)
chr4 (171-254)||(36364670-36364754)
chr4 (171-252)||(18568702-18568784)
chr4 (171-253)||(31275248-31275330)
chr4 (171-251)||(15638232-15638313)
chr4 (171-251)||(24088428-24088509)
chr4 (171-252)||(47998696-47998776)
chr4 (175-251)||(16004216-16004291)
chr4 (171-245)||(8026658-8026733)
chr4 (171-253)||(20632534-20632617)
chr4 (171-252)||(3475970-3476052)
chr4 (171-253)||(11012227-11012309)
chr4 (171-252)||(24772773-24772854)
chr4 (178-255)||(31804215-31804293)
chr4 (171-204)||(3223091-3223124)
chr4 (172-225)||(35661512-35661565)
chr4 (171-252)||(42915107-42915188)
[»] chr1 (22 HSPs)
chr1 (171-252)||(41558095-41558176)
chr1 (171-252)||(8934422-8934503)
chr1 (620-698)||(20638564-20638642)
chr1 (171-252)||(30530287-30530368)
chr1 (171-251)||(6841893-6841973)
chr1 (171-254)||(7423116-7423199)
chr1 (620-694)||(11352705-11352779)
chr1 (171-251)||(34002209-34002289)
chr1 (171-255)||(39010916-39011000)
chr1 (171-253)||(46948081-46948163)
chr1 (219-251)||(12039615-12039647)
chr1 (171-251)||(40610331-40610411)
chr1 (217-252)||(10426881-10426916)
chr1 (171-252)||(25130805-25130887)
chr1 (171-201)||(29489298-29489328)
chr1 (171-253)||(30631732-30631814)
chr1 (171-255)||(21255669-21255754)
chr1 (171-252)||(28253117-28253198)
chr1 (171-252)||(33422107-33422188)
chr1 (171-252)||(33669711-33669792)
chr1 (171-252)||(44112556-44112637)
chr1 (175-251)||(47966671-47966747)
[»] chr8 (21 HSPs)
chr8 (171-254)||(2768266-2768349)
chr8 (620-698)||(18480158-18480236)
chr8 (171-252)||(154392-154473)
chr8 (171-252)||(2597047-2597129)
chr8 (59-113)||(26863415-26863469)
chr8 (171-252)||(33511703-33511785)
chr8 (171-252)||(43605556-43605638)
chr8 (172-253)||(7129636-7129717)
chr8 (171-252)||(23258134-23258215)
chr8 (175-254)||(11139002-11139082)
chr8 (183-245)||(20284821-20284884)
chr8 (183-245)||(21071450-21071513)
chr8 (171-245)||(30927825-30927900)
chr8 (171-249)||(37562031-37562110)
chr8 (171-245)||(41273617-41273692)
chr8 (58-112)||(26844535-26844589)
chr8 (175-251)||(5924916-5924993)
chr8 (175-251)||(5925161-5925238)
chr8 (208-245)||(17492535-17492572)
chr8 (171-251)||(20994946-20995027)
chr8 (175-247)||(30129515-30129588)
[»] chr5 (17 HSPs)
chr5 (620-705)||(34904495-34904580)
chr5 (171-253)||(40566103-40566186)
chr5 (171-252)||(17489450-17489532)
chr5 (181-251)||(24431507-24431577)
chr5 (171-251)||(3722965-3723045)
chr5 (171-251)||(39595376-39595456)
chr5 (171-250)||(125194-125273)
chr5 (172-255)||(20125493-20125576)
chr5 (172-254)||(22203810-22203893)
chr5 (171-252)||(8959262-8959344)
chr5 (171-253)||(27392589-27392671)
chr5 (175-252)||(18638729-18638806)
chr5 (173-250)||(20541206-20541283)
chr5 (175-252)||(20719903-20719980)
chr5 (171-224)||(22920408-22920461)
chr5 (171-252)||(29402284-29402365)
chr5 (171-252)||(33567127-33567208)
[»] chr6 (7 HSPs)
chr6 (171-252)||(30795983-30796064)
chr6 (171-252)||(1803971-1804053)
chr6 (620-671)||(941643-941694)
chr6 (171-250)||(2340500-2340579)
chr6 (171-253)||(30622126-30622208)
chr6 (171-252)||(34021060-34021141)
chr6 (175-224)||(237314-237363)
[»] chr7 (13 HSPs)
chr7 (171-251)||(12141986-12142066)
chr7 (171-254)||(17500799-17500882)
chr7 (171-254)||(17552332-17552415)
chr7 (171-256)||(10014838-10014924)
chr7 (171-245)||(26041412-26041487)
chr7 (171-245)||(40077357-40077432)
chr7 (171-204)||(44175647-44175680)
chr7 (171-250)||(32315928-32316008)
chr7 (173-252)||(155869-155948)
chr7 (171-252)||(8742485-8742567)
chr7 (171-252)||(37385120-37385202)
chr7 (171-252)||(37351878-37351959)
chr7 (171-251)||(42431825-42431906)
[»] chr3 (26 HSPs)
chr3 (173-255)||(47683894-47683977)
chr3 (171-248)||(43460490-43460568)
chr3 (20-99)||(3025095-3025174)
chr3 (171-251)||(54233389-54233470)
chr3 (171-254)||(23906872-23906956)
chr3 (171-245)||(28263647-28263722)
chr3 (217-252)||(46574289-46574324)
chr3 (171-245)||(1031322-1031396)
chr3 (171-253)||(7231893-7231975)
chr3 (171-253)||(41111959-41112041)
chr3 (171-252)||(46092847-46092928)
chr3 (217-253)||(3484893-3484929)
chr3 (171-251)||(28300535-28300615)
chr3 (171-252)||(38692226-38692295)
chr3 (171-254)||(622345-622428)
chr3 (171-245)||(34021357-34021432)
chr3 (171-245)||(52453986-52454061)
chr3 (171-245)||(1295434-1295508)
chr3 (171-252)||(44910806-44910888)
chr3 (171-253)||(47849772-47849854)
chr3 (171-252)||(11173552-11173633)
chr3 (171-252)||(20380777-20380858)
chr3 (171-252)||(46473230-46473311)
chr3 (201-245)||(48405416-48405461)
chr3 (172-201)||(49114539-49114568)
chr3 (171-251)||(53932279-53932360)
[»] chr2 (18 HSPs)
chr2 (171-253)||(32755780-32755863)
chr2 (171-251)||(10749568-10749648)
chr2 (171-251)||(36909732-36909812)
chr2 (217-254)||(34261910-34261947)
chr2 (175-251)||(2308213-2308289)
chr2 (171-254)||(546271-546354)
chr2 (171-245)||(37966458-37966533)
chr2 (171-245)||(44484550-44484625)
chr2 (171-253)||(2013172-2013254)
chr2 (175-252)||(6742297-6742375)
chr2 (173-251)||(10389323-10389401)
chr2 (225-255)||(42665697-42665727)
chr2 (171-252)||(43791678-43791760)
chr2 (171-252)||(3091843-3091924)
chr2 (171-252)||(13104581-13104662)
chr2 (171-204)||(18949108-18949141)
chr2 (171-252)||(22390254-22390335)
chr2 (171-252)||(32750100-32750181)
[»] scaffold0260 (1 HSPs)
scaffold0260 (171-250)||(21390-21469)
[»] scaffold0057 (1 HSPs)
scaffold0057 (172-245)||(21469-21542)
[»] scaffold0020 (1 HSPs)
scaffold0020 (171-252)||(156008-156089)
[»] scaffold0085 (1 HSPs)
scaffold0085 (171-251)||(32081-32158)
[»] scaffold0016 (1 HSPs)
scaffold0016 (171-251)||(204335-204416)


Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 171 - 620
Target Start/End: Original strand, 19315008 - 19315446
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactctaatgcatattgattaact 270  Q
    ||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  19315008 attgtttttgaccaataagaagaaagaaaaagaaag------------ttgtcacaaatggttgtacaaatatcactactctaatagatattgattaact 19315095  T
Q  271 tcataaacttgataaacaatttgtttcttaccctcacttactcatcc-gacatatatagatagagagctcaaccaatgctgagattaagagattttctta 369  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||  ||||||||    
T  19315096 tcataaacttgataaacaatttgtttctcaccctcacttactcatcccgacatatatagatagagagctcaaccaatgcagagattaaga--ttttctta 19315193  T
Q  370 gccatcaccatggtggcttaatgaattcaaaagagagactttagctagcaccatgtagttttgttgactttgtttttatat--gtgtgcgatcaagacag 467  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||  ||||| | |||||||||    
T  19315194 gccatcaccatggtggcttaatgaattcaaaagagagactttagttagcaccatgtagttttgttgacttcgtttttatatatgtgtgggttcaagacag 19315293  T
Q  468 tcccaaacattttagaggcactgctctaacaaatttgagcccatcagaattttggcaatctaattttttgaggttaaaattggcatatgaaataagcaag 567  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19315294 tcccaaacattttagagacactgctctaacaaatttgagtccatcagaattttggcaatctaattttttgaggttaaaattggcatttgaaataagcaag 19315393  T
Q  568 tagatgttgttttgtcaataatttgtctctatttatagagaaatgaaacaact 620  Q
    | |||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  19315394 ttgatgttgttttgtcaataatttgtctctttttatagagaaaagaaacaact 19315446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 19314843 - 19314970
Alignment:
Q  1 attatgtatcaaagtgtgtttataatttttgtgagtactggtgaacatattaattatgtttaataataattatgttacatctaatcatataattttaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19314843 attatgtatcaaagtgtgtttataatttttgtgagtactggtgaacatattaattatgtttaaaaataattatgttacatctaatcatataattttaatt 19314942  T
Q  101 gtatgtcataatacattatgtttttatc 128  Q
    ||||||||||||||||||||||||||||    
T  19314943 gtatgtcataatacattatgtttttatc 19314970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 620 - 705
Target Start/End: Original strand, 19316995 - 19317080
Alignment:
Q  620 tatgatcgaacaaattagaaattacagtagtattccaaacctttgttgatggctcggtgatgtcctgaactttgacatgtgatagg 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19316995 tatgatcgaacaaattagaaattacagtagtattccaaacctttgttgatggctcggtgatgtcctgaactttgacatgtgatagg 19317080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 19328499 - 19328573
Alignment:
Q  39 tggtgaacatattaattatgtttaataataattatgttacatctaatcatataattttaattgtatgtcataata 113  Q
    ||||||| |||||||||| |||||| |||||||||||||| ||||| | |||||||||| |||||||||||||||    
T  19328499 tggtgaatatattaattaagtttaaaaataattatgttacttctaagcgtataattttatttgtatgtcataata 19328573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 174 - 255
Target Start/End: Original strand, 34259931 - 34260013
Alignment:
Q  174 gtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactctaat 255  Q
    |||||||||||||||||||| ||||||||||   ||| |||| |||||||| ||||||||||||||||||||| |||||||||    
T  34259931 gtttttgaccaataagaagagagaaaaagaagtttgtcacaaaagttgtcaccaaatggttgtacaaatatcattactctaat 34260013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 620 - 698
Target Start/End: Original strand, 43990365 - 43990443
Alignment:
Q  620 tatgatcgaacaaattagaaattacagtagtattccaaacctttgttgatggctcggtgatgtcctgaactttgacatg 698  Q
    ||||||| |||||||||||||||| ||| | ||||||||||||||| ||||| ||| ||||||| ||||||||||||||    
T  43990365 tatgatcaaacaaattagaaattaaagttgcattccaaacctttgtcgatggttcgatgatgtcttgaactttgacatg 43990443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 11064058 - 11063977
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    ||||||||||||| |||| ||||||||||| ||||| ||| || | |||||||  |||||||||| ||||||||||||||||    
T  11064058 attgtttttgaccgataaaaagaaagaaaatgaaagttgtcaccaaagttgtcttaaatggttgttcaaatatcactactct 11063977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 544 - 609
Target Start/End: Original strand, 16006889 - 16006954
Alignment:
Q  544 aaattggcatatgaaataagcaagtagatgttgttttgtcaataatttgtctctatttatagagaa 609  Q
    ||||||||||||||||||||||| |  |||||||||||  |||||||||||||| |||||||||||    
T  16006889 aaattggcatatgaaataagcaaattcatgttgttttgctaataatttgtctctttttatagagaa 16006954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 5234440 - 5234360
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactc 251  Q
    |||||||||||||||||| |||| ||||||| |||  ||| |||| ||||||  ||||||||||| |||||||||||||||    
T  5234440 attgtttttgaccaataaaaagagagaaaaaaaaaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactc 5234360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 22071600 - 22071681
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    ||||||||| ||||||||||||| |||||||||||| ||| | |  ||||||  ||||||||||||| ||||||||| ||||    
T  22071600 attgtttttaaccaataagaagagagaaaaagaaagttgtcaaacaagttgtaccaaatggttgtactaatatcactcctct 22071681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 36364754 - 36364670
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactctaa 254  Q
    ||||||||||||||||||||||| ||||||   | ||||| |||| |||||||| |||| |||||| ||||||||| ||||||||    
T  36364754 attgtttttgaccaataagaagagagaaaagataggctgtcacaaaagttgtcatcaaaaggttgttcaaatatcattactctaa 36364670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 18568784 - 18568702
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactct 252  Q
    ||||||||||||||||||||||| ||||||  || | ||| || | |||||||| ||| ||| ||||||||||||||||||||    
T  18568784 attgtttttgaccaataagaagatagaaaagcaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactct 18568702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 31275248 - 31275330
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactcta 253  Q
    |||||||||||||||| | |||| |||||||  ||  ||| |||| ||||||  ||||||||||| |||||||||||||||||    
T  31275248 attgtttttgaccaatgaaaagagagaaaaaagaaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactcta 31275330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 15638232 - 15638313
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactc 251  Q
    |||||||||| |||||||||||| ||||||| || | ||| || | |||||||| ||| ||| |||||||||||||||||||    
T  15638232 attgtttttgtccaataagaagagagaaaaacaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactc 15638313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 24088509 - 24088428
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcac-aaatggttgtacaaatatcactactc 251  Q
    |||||| |||||||||| ||||| ||||| |||| | ||| |||| ||||||||| ||||||||||| |||||||| |||||    
T  24088509 attgttgttgaccaatacgaagagagaaagagaaggttgtcacaagagttgtcaccaaatggttgtaaaaatatcattactc 24088428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 47998696 - 47998776
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||| | |||||||||||| |||| | | |||| ||||||  |||||| |||| ||||||||||||||||    
T  47998696 attgtttttgaccaatgaaaagaaagaaaaa-aaagttatcacaaaagttgtatcaaatgattgttcaaatatcactactct 47998776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 16004291 - 16004216
Alignment:
Q  175 tttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactc 251  Q
    |||||||||||| | |||| ||||||| |||| ||| |||| ||||||| ||||||| ||| |||||||||||||||    
T  16004291 tttttgaccaatgaaaagagagaaaaa-aaagttgtcacaagagttgtctcaaatggatgttcaaatatcactactc 16004216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 8026733 - 8026658
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatca 245  Q
    ||||||||||||||||||||||| ||||||| |||| ||| || | ||||||||   ||||| |||||||||||||    
T  8026733 attgtttttgaccaataagaagagagaaaaacaaagttgtcactaaagttgtcatggaatggatgtacaaatatca 8026658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 20632617 - 20632534
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactcta 253  Q
    ||||||||||||||||| ||||| | ||||| |||| ||| || | | |||||| ||| ||| |||||||||||||||||||||    
T  20632617 attgtttttgaccaataggaagagaaaaaaataaagttgtcaccaaaattgtcatcaattggatgtacaaatatcactactcta 20632534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 3475970 - 3476052
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||| | |||||||||||| || | ||| ||||  ||||||| |||||||||||  |||||||| ||||||    
T  3475970 attgtttttgaccaatgaaaagaaagaaaaataaggttgtcacaaatgttgtcatcaaatggttgtcaaaatatcattactct 3476052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 11012227 - 11012309
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactcta 253  Q
    |||||||  |||||||||||| | |||||| ||||| ||| |  | |||||||||| ||| ||||||| ||||||||||||||    
T  11012227 attgtttcggaccaataagaaaagagaaaatgaaagttgtcatcaaagttgtcacatatgattgtacatatatcactactcta 11012309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 24772773 - 24772854
Alignment:
Q  171 attgtttttgaccaataagaagaaaga-aaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||||| |||| ||| ||||||||  ||| |||| ||||||| ||||||| ||| |||||||||| |||||    
T  24772773 attgtttttgaccaataaaaagagagagaaaagaaa-ttgtcacaagagttgtctcaaatggatgttcaaatatcaccactct 24772854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 31804293 - 31804215
Alignment:
Q  178 ttgaccaataagaagaaagaaaaagaaagctgttacaatagttgt-cacaaatggttgtacaaatatcactactctaat 255  Q
    |||||||||| |||||||||||| ||||| ||| |  | |||||| |||||||| ||||| ||||| ||||||||||||    
T  31804293 ttgaccaataggaagaaagaaaatgaaagttgtcatcaaagttgttcacaaatgattgtataaataacactactctaat 31804215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 3223091 - 3223124
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaa 204  Q
    ||||||||||||||||||||||| ||||||||||    
T  3223091 attgtttttgaccaataagaagagagaaaaagaa 3223124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 35661565 - 35661512
Alignment:
Q  172 ttgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcac 225  Q
    |||||||| |||||||| || |||||||||||| | |||||||| |||||||||    
T  35661565 ttgttttttaccaataaaaataaagaaaaagaatgttgttacaaaagttgtcac 35661512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 42915188 - 42915107
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    ||||||||| |||||| | |||| |||||||  ||| ||| |||| ||||||  ||||| ||||| ||||||||||||||||    
T  42915188 attgtttttaaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatagttgttcaaatatcactactct 42915107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 41558095 - 41558176
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  41558095 attgtttttgaccaataagaagaaagaaaaggaaagttgtcacaatagttgtcacaaatggttgtacaaatatcactactct 41558176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 8934503 - 8934422
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    ||||||||||||||||||||| | |||||||||||| ||| | |  | ||||||||||||||||| ||||||||||||||||    
T  8934503 attgtttttgaccaataagaaaagagaaaaagaaagttgtcatagaaattgtcacaaatggttgttcaaatatcactactct 8934422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 620 - 698
Target Start/End: Complemental strand, 20638642 - 20638564
Alignment:
Q  620 tatgatcgaacaaattagaaattacagtagtattccaaacctttgttgatggctcggtgatgtcctgaactttgacatg 698  Q
    ||||||| |||||||||||||||| ||||| || |||||||||||| ||||| ||| |||| || ||||||||||||||    
T  20638642 tatgatcaaacaaattagaaattaaagtagcatgccaaacctttgtcgatggttcgatgatatcttgaactttgacatg 20638564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 30530368 - 30530287
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||| |||||||||||||| |||||| ||||| ||| |  | ||||||| |||||||||||||| |||||||||||||    
T  30530368 attgttttggaccaataagaagagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtacatatatcactactct 30530287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 6841893 - 6841973
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactc 251  Q
    |||||||||||||||||| |||| |||||||||||| ||| |  |||||||||| |||| ||||| ||||||||| |||||    
T  6841893 attgtttttgaccaataaaaagagagaaaaagaaagttgtcatgatagttgtcaaaaatagttgttcaaatatcagtactc 6841973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 7423116 - 7423199
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactctaa 254  Q
    ||||||||||||||||||||| | |||||| ||| | ||| |||| |||||| | |||| |||||| |||||||||||||||||    
T  7423116 attgtttttgaccaataagaaaagagaaaaggaaggttgtcacaaaagttgttaaaaatagttgtataaatatcactactctaa 7423199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 620 - 694
Target Start/End: Original strand, 11352705 - 11352779
Alignment:
Q  620 tatgatcgaacaaattagaaattacagtagtattccaaacctttgttgatggctcggtgatgtcctgaactttga 694  Q
    ||||||| |||||||||||||||| ||||| | | ||||||||||| ||||| ||| ||||||| ||||||||||    
T  11352705 tatgatcaaacaaattagaaattaaagtagcacttcaaacctttgtcgatggttcgatgatgtcttgaactttga 11352779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 34002289 - 34002209
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactc 251  Q
    |||||||| |||||||||||||| |||||| ||||| ||| |  | ||||||| ||||| |||||||| ||||||||||||    
T  34002289 attgttttggaccaataagaagagagaaaatgaaagttgtgatcaaagttgtcccaaatagttgtacatatatcactactc 34002209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 39010916 - 39011000
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactctaat 255  Q
    |||||||||||||||| | |||| |||||||  ||| ||| |||| ||||||| || |||||||| |||||| ||||||||||||    
T  39010916 attgtttttgaccaatgaaaagagagaaaaaataagttgtcacaaaagttgtctcatatggttgttcaaataacactactctaat 39011000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 46948081 - 46948163
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactcta 253  Q
    |||||||||||||||| | |||| ||| |||  ||| ||| |||| ||||||| ||||||| ||| |||||||||||||||||    
T  46948081 attgtttttgaccaatgaaaagatagagaaaagaagttgtcacaagagttgtctcaaatggatgttcaaatatcactactcta 46948163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 219 - 251
Target Start/End: Complemental strand, 12039647 - 12039615
Alignment:
Q  219 ttgtcacaaatggttgtacaaatatcactactc 251  Q
    |||||||||||||||||||||||||||||||||    
T  12039647 ttgtcacaaatggttgtacaaatatcactactc 12039615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 40610331 - 40610411
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactc 251  Q
    |||||||||||||||| | |||| ||| |||  ||| ||| |||| ||||||| ||||||| ||| |||||||||||||||    
T  40610331 attgtttttgaccaatgaaaagagagagaaaagaagttgtcacaaaagttgtctcaaatggatgttcaaatatcactactc 40610411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 252
Target Start/End: Original strand, 10426881 - 10426916
Alignment:
Q  217 agttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||| |||||||||||||||||||||||||    
T  10426881 agttgtcacacatggttgtacaaatatcactactct 10426916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 25130805 - 25130887
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactct 252  Q
    ||||||||||||||||||||||| ||||||| || | ||| || | ||||||||  |||| | ||||||||||||||| ||||    
T  25130805 attgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatgaaatagatgtacaaatatcactgctct 25130887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 201
Target Start/End: Complemental strand, 29489328 - 29489298
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaa 201  Q
    |||||||||||||||||||||||||||||||    
T  29489328 attgtttttgaccaataagaagaaagaaaaa 29489298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 30631814 - 30631732
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactcta 253  Q
    |||||||||||||||| | |||  |||||||  ||| |||  ||| |||||||  |||||||||| |||||||||||||||||    
T  30631814 attgtttttgaccaatgaaaagtgagaaaaaagaagttgtaccaaaagttgtctaaaatggttgttcaaatatcactactcta 30631732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 21255754 - 21255669
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactctaat 255  Q
    |||||||||||||||| |||||| |||||||| | | ||| | || |||||| | ||||||||||| ||||||||| | |||||||    
T  21255754 attgtttttgaccaatgagaagagagaaaaaggaggttgtcataaaagttgttagcaaatggttgttcaaatatcattgctctaat 21255669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 28253117 - 28253198
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||| | |||| ||| |||  ||| |||||||| ||||||| || |||||||| |||||| ||| |||||    
T  28253117 attgtttttgaccaatgaaaagagagagaaaagaagttgttacaaaagttgtctcatatggttgttcaaataacaccactct 28253198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 33422188 - 33422107
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||| ||||||| |||||| ||||||  |||| ||| |  | |||||||||||||||||||  | |||||||||||||    
T  33422188 attgttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactct 33422107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 33669792 - 33669711
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||| ||||||| |||||| | |||| || || ||| |  | ||||||| |||||||||||||| |||||||||||||    
T  33669792 attgttttggaccaatgagaagagaaaaaatgagagttgtcatcaaagttgtcccaaatggttgtacatatatcactactct 33669711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 44112556 - 44112637
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||| ||||||| |||||| ||||||  |||| ||| |  | |||||||||||||||||||  | |||||||||||||    
T  44112556 attgttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactct 44112637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 47966747 - 47966671
Alignment:
Q  175 tttttgaccaataagaagaaagaaaaaga-aagctgttacaatagttgtcacaaatggttgtacaaatatcactactc 251  Q
    ||||||||||||||||||| | |||| || ||| ||| | |||| |||||||||||| |||||||||||||| |||||    
T  47966747 tttttgaccaataagaagaga-aaaaggagaagttgtcaaaatatttgtcacaaatgattgtacaaatatcattactc 47966671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 2768266 - 2768349
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactctaa 254  Q
    ||||||||||||||||||||||||| ||| |||||| ||| |||||||||||| ||||||||| ||||||||||||||||||||    
T  2768266 attgtttttgaccaataagaagaaacaaagagaaagttgtcacaatagttgtcgcaaatggttctacaaatatcactactctaa 2768349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 620 - 698
Target Start/End: Complemental strand, 18480236 - 18480158
Alignment:
Q  620 tatgatcgaacaaattagaaattacagtagtattccaaacctttgttgatggctcggtgatgtcctgaactttgacatg 698  Q
    ||||||| |||||||||||||||| ||||| |||| |||||||||| ||||| ||| ||||||| ||||||||||||||    
T  18480236 tatgatcaaacaaattagaaattaaagtagcattcgaaacctttgtcgatggttcgatgatgtcttgaactttgacatg 18480158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 154392 - 154473
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||||| |||| |||||| ||||| ||| ||||||||||||  || ||||||| ||||||||||||||||    
T  154392 attgtttttgaccaataaaaagagagaaaatgaaagttgtcacaatagttgtcttaattggttgttcaaatatcactactct 154473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 2597129 - 2597047
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactct 252  Q
    ||||||||||||||||||||||| ||||||| || | ||| || | |||||||| ||| ||  ||||||||||||||||||||    
T  2597129 attgtttttgaccaataagaagagagaaaaacaaggttgtcaccaaagttgtcatcaattgaatgtacaaatatcactactct 2597047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 26863415 - 26863469
Alignment:
Q  59 tttaataataattatgttacatctaatcatataattttaattgtatgtcataata 113  Q
    ||||| |||||||||||||| ||||| |||||||||||| |||||||| ||||||    
T  26863415 tttaaaaataattatgttacttctaaacatataattttatttgtatgtaataata 26863469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 33511703 - 33511785
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcac-aaatggttgtacaaatatcactactct 252  Q
    ||||||||||||||||||||||| |||| ||||| | |||  ||| |||| |||| |||| ||||||||||||||| ||||||    
T  33511703 attgtttttgaccaataagaagagagaagaagaatgttgtcccaaaagttttcacaaaatagttgtacaaatatcattactct 33511785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 43605638 - 43605556
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcac-aaatggttgtacaaatatcactactct 252  Q
    ||||||||||||||||||||||| |||||| | | | ||| |||| ||||||||| ||| |||||| ||||||||| ||||||    
T  43605638 attgtttttgaccaataagaagagagaaaaggtaggttgtcacaaaagttgtcactaaaaggttgttcaaatatcattactct 43605556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 7129636 - 7129717
Alignment:
Q  172 ttgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactcta 253  Q
    |||||||||||||||||||||| ||||||| |||| ||| |  | ||||||   |||||  |||||||||||||||||||||    
T  7129636 ttgtttttgaccaataagaagagagaaaaacaaagttgtcatcaaagttgtatgaaatgaatgtacaaatatcactactcta 7129717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 23258134 - 23258215
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||| | |||| |||||||  ||| ||| |||| | ||||  ||||||||||| ||||||||||||||||    
T  23258134 attgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaaattgtttcaaatggttgttcaaatatcactactct 23258215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 175 - 254
Target Start/End: Original strand, 11139002 - 11139082
Alignment:
Q  175 tttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactctaa 254  Q
    |||||||||||||| |||| ||||||| |||| ||| || | |||||||| ||| | | ||||||||||||||||||||||    
T  11139002 tttttgaccaataaaaagatagaaaaacaaagttgtcaccaaagttgtcatcaatttgatgtacaaatatcactactctaa 11139082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 20284821 - 20284884
Alignment:
Q  183 caataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatca 245  Q
    ||||||||||| |||||||||| | ||| |||| |||||||| ||||||||||| |||||||||    
T  20284821 caataagaagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttgttcaaatatca 20284884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 245
Target Start/End: Original strand, 21071450 - 21071513
Alignment:
Q  183 caataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatca 245  Q
    ||||||||||| |||||||||| | ||| |||| |||||||| ||||||||||| |||||||||    
T  21071450 caataagaagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttgttcaaatatca 21071513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 30927900 - 30927825
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatca 245  Q
    ||||||||||||||||||||||| ||||||| || | ||| || | ||||||||  |||||| |||||||||||||    
T  30927900 attgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatgaaatggatgtacaaatatca 30927825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 37562110 - 37562031
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactac 249  Q
    ||||||||||||||||||||||| ||||||| || | ||| |  | |||||||| ||| ||| |||||||||||||||||    
T  37562110 attgtttttgaccaataagaagagagaaaaacaaggttgtcatcaaagttgtcatcaattggatgtacaaatatcactac 37562031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 41273617 - 41273692
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatca 245  Q
    ||||||||||||||||||||||| ||||||| || | |||||| | ||||||||   ||||| |||||||||||||    
T  41273617 attgtttttgaccaataagaagagagaaaaacaaggttgttactaaagttgtcatggaatggatgtacaaatatca 41273692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 26844535 - 26844589
Alignment:
Q  58 gtttaataataattatgttacatctaatcatataattttaattgtatgtcataat 112  Q
    |||||| |||||||||||||||| ||| |||||| ||||| |||||||| |||||    
T  26844535 gtttaaaaataattatgttacatataagcatatagttttatttgtatgtaataat 26844589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 5924916 - 5924993
Alignment:
Q  175 tttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactc 251  Q
    ||||||||||||||||||| ||||||| || | ||| |  | |||||||| ||||||| |||||| ||||||||||||    
T  5924916 tttttgaccaataagaagagagaaaaataaggttgtcatgaaagttgtcatcaaatggatgtacatatatcactactc 5924993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 5925161 - 5925238
Alignment:
Q  175 tttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactc 251  Q
    ||||||||||||||||| | ||||||| || | ||| | || |||||||| ||||||| |||||| ||||||||||||    
T  5925161 tttttgaccaataagaatagagaaaaataaggttgtcataaaagttgtcatcaaatggatgtacatatatcactactc 5925238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 17492572 - 17492535
Alignment:
Q  208 tgttacaatagttgtcacaaatggttgtacaaatatca 245  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  17492572 tgttacaaaagttgtcacaaatgattgtacaaatatca 17492535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 20995027 - 20994946
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactc 251  Q
    ||||||||||||||||||||||| |||||| | | | ||| |||| |||||||| || | |||||| ||||||||| |||||    
T  20995027 attgtttttgaccaataagaagagagaaaaggtaggttgtcacaaaagttgtcaccagaaggttgttcaaatatcattactc 20994946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 30129515 - 30129588
Alignment:
Q  175 tttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcact 247  Q
    ||||||||||||||||||| ||||||  |||| ||| || | |||||||| ||| ||| |||||||||||||||    
T  30129515 tttttgaccaataagaagagagaaaagcaaagttgtcaccaaagttgtcatcaattggatgtacaaatatcact 30129588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 620 - 705
Target Start/End: Complemental strand, 34904580 - 34904495
Alignment:
Q  620 tatgatcgaacaaattagaaattacagtagtattccaaacctttgttgatggctcggtgatgtcctgaactttgacatgtgatagg 705  Q
    |||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| | | ||||||||||| ||||||    
T  34904580 tatgattgaacatattagaaattagagtagtattccaaacctttgttgatggctcgatgatgttcggcactttgacatgggatagg 34904495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 40566186 - 40566103
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaa-agaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactcta 253  Q
    |||||||||||||||| | |||| |||||| | |||| ||||| || ||||||| ||||||| ||| |||||||||||||||||    
T  40566186 attgtttttgaccaatgaaaagagagaaaataaaaagttgttaaaaaagttgtctcaaatggatgttcaaatatcactactcta 40566103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 17489450 - 17489532
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactct 252  Q
    ||||||||||||||||||||||| ||||||| ||   ||| || | |||||||| ||| ||| ||||||||||||||||||||    
T  17489450 attgtttttgaccaataagaagagagaaaaacaagattgtcaccaaagttgtcatcaattggatgtacaaatatcactactct 17489532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 24431577 - 24431507
Alignment:
Q  181 accaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactc 251  Q
    |||||| | |||| |||||||  ||| ||| |||||||||||| ||||||||||| |||||||||||||||    
T  24431577 accaatgaaaagagagaaaaatgaagttgtcacaatagttgtctcaaatggttgttcaaatatcactactc 24431507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 3723045 - 3722965
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactc 251  Q
    |||||||| ||||||||| |||| |||||| ||||| ||| |  | ||||||| |||||||||||||| |||||| |||||    
T  3723045 attgttttggaccaataaaaagagagaaaatgaaagttgtcatcaaagttgtcccaaatggttgtacatatatcattactc 3722965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 39595376 - 39595456
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactc 251  Q
    |||||||||||||||| | |||| |||||||  ||| ||| |||| ||||||  ||||||||||| ||||||||| |||||    
T  39595376 attgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatatcattactc 39595456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 125194 - 125273
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactact 250  Q
    |||||||||||||||| | |||| |||||||  ||| |||  ||| ||||||  ||||||||||| ||||||||||||||    
T  125194 attgtttttgaccaatgaaaagagagaaaaaagaagttgtcgcaaaagttgtatcaaatggttgttcaaatatcactact 125273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 255
Target Start/End: Original strand, 20125493 - 20125576
Alignment:
Q  172 ttgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactctaat 255  Q
    ||||||||||||||| |||||| |||||| ||||| ||| |  | ||||||| ||||| |||||| | ||||||| ||||||||    
T  20125493 ttgtttttgaccaatgagaagagagaaaatgaaagttgtcatcaaagttgtcccaaatagttgtatatatatcaccactctaat 20125576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 254
Target Start/End: Original strand, 22203810 - 22203893
Alignment:
Q  172 ttgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactctaa 254  Q
    |||||||||||||||||||||| |||||| ||| | ||| |||| | ||  || ||||||||||||||||||| | ||||||||    
T  22203810 ttgtttttgaccaataagaagagagaaaaggaaggttgtcacaaaaattaccatcaaatggttgtacaaatattattactctaa 22203893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 8959262 - 8959344
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||||| |||| ||||||| || | |||  | | |||||||| ||| ||| ||||||||||||||||||||    
T  8959262 attgtttttgaccaataaaaagagagaaaaacaaggttgtcgccaaagttgtcatcaattggatgtacaaatatcactactct 8959344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 27392671 - 27392589
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactcta 253  Q
    |||||||||||||||| | |||| | |||||  ||| ||| |||| ||||||| || |||||||| |||||| ||||||||||    
T  27392671 attgtttttgaccaatgaaaagagaaaaaaaataagttgtcacaaaagttgtctcatatggttgttcaaataacactactcta 27392589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 18638806 - 18638729
Alignment:
Q  175 tttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||| |||||||||||| | ||||||  |||| ||| |  | ||||||| |||||||||||||| |||||||||||||    
T  18638806 ttttggaccaataagaaaagagaaaataaaagttgtcatcaaagttgtcccaaatggttgtacatatatcactactct 18638729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 20541206 - 20541283
Alignment:
Q  173 tgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactact 250  Q
    ||||||| |||| ||| |||| |||||||| ||  |||||||| | |||| |||||| ||||| ||||||||||||||    
T  20541206 tgttttttaccactaaaaagatagaaaaagtaaattgttacaaaaattgttacaaatagttgttcaaatatcactact 20541283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 20719980 - 20719903
Alignment:
Q  175 tttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||||| | |||| ||| |||  ||| ||| |||| ||||||| ||||||| ||| ||||||||||||||||    
T  20719980 tttttgaccaatgaaaagagagagaaaagaagttgtcacaaaagttgtctcaaatggatgttcaaatatcactactct 20719903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 22920461 - 22920408
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca 224  Q
    ||||||||||||||||||||||| ||||||| || | ||| || ||||||||||    
T  22920461 attgtttttgaccaataagaagagagaaaaacaaggttgtcactatagttgtca 22920408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 29402284 - 29402365
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||| ||||||||||||| ||||||||||||  ||| ||| |||  ||||||| || |||||||| |||| ||||| |||||    
T  29402284 attgattttgaccaataaaaagaaagaaaaaagaagttgtcacataagttgtctcacatggttgttcaaacatcaccactct 29402365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 33567208 - 33567127
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||| | |||| |||||||  ||  ||| |||| ||||||  ||||||||||| || |||||||||||||    
T  33567208 attgtttttgaccaatgaaaagagagaaaaaagaaattgtcacaaaagttgtatcaaatggttgttcatatatcactactct 33567127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 30796064 - 30795983
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    ||||||||||||||||||||| ||||||| |||||| ||| | |  |||||||||||||||| |||||||||||||||||||    
T  30796064 attgtttttgaccaataagaaaaaagaaatagaaagttgtcatacaagttgtcacaaatggtagtacaaatatcactactct 30795983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 1803971 - 1804053
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactct 252  Q
    ||||||||||||||||||||||| ||||||| || | ||| || | |||||||| ||| ||| ||||||||||||||||||||    
T  1803971 attgtttttgaccaataagaagagagaaaaacaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactct 1804053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 620 - 671
Target Start/End: Complemental strand, 941694 - 941643
Alignment:
Q  620 tatgatcgaacaaattagaaattacagtagtattccaaacctttgttgatgg 671  Q
    ||||||| |||||||||||||||| ||||| ||||||||||||||| |||||    
T  941694 tatgatcaaacaaattagaaattaaagtagcattccaaacctttgtcgatgg 941643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 2340500 - 2340579
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactact 250  Q
    |||||||| ||||||||| |||| |||||||||||  | |||||| ||||||| |||||| ||||  |||||||||||||    
T  2340500 attgttttcgaccaataaaaagagagaaaaagaaaattattacaaaagttgtctcaaatgattgtttaaatatcactact 2340579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 30622126 - 30622208
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactcta 253  Q
    |||||||| |||||||||||||| | |||| ||||| ||| |  | ||||||| ||||| |||||||| ||||||||||||||    
T  30622126 attgttttggaccaataagaagagaaaaaatgaaagttgtcatcaaagttgtcccaaatagttgtacatatatcactactcta 30622208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 34021141 - 34021060
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||| | |||| ||| |||  ||| ||||| || ||||||| ||||||| ||| ||||||||||||||||    
T  34021141 attgtttttgaccaatgaaaagagagagaaaagaagttgttaaaaaagttgtctcaaatggatgttcaaatatcactactct 34021060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 237363 - 237314
Alignment:
Q  175 tttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca 224  Q
    ||||||||||||||||||| ||||||| |||| ||| |||| ||||||||    
T  237363 tttttgaccaataagaagagagaaaaacaaagatgtcacaaaagttgtca 237314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 12141986 - 12142066
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactc 251  Q
    |||||||||||||||| | |||||||||||| |||| ||| |||| ||||||  ||||||||||| |||||||||||||||    
T  12141986 attgtttttgaccaatgaaaagaaagaaaaaaaaagttgtcacaaaagttgtatcaaatggttgttcaaatatcactactc 12142066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 17500799 - 17500882
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactctaa 254  Q
    |||||||| |||||||||||||| |||||| ||||| | | |  | ||||||| |||||||||||||| |||||||||||||||    
T  17500799 attgttttggaccaataagaagagagaaaatgaaagttatcatcaaagttgtcccaaatggttgtacatatatcactactctaa 17500882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 17552415 - 17552332
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactctaa 254  Q
    |||||||| |||||||||||||| |||||| ||||| | | |  | ||||||| |||||||||||||| |||||||||||||||    
T  17552415 attgttttggaccaataagaagagagaaaatgaaagttatcatcaaagttgtcccaaatggttgtacatatatcactactctaa 17552332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 256
Target Start/End: Complemental strand, 10014924 - 10014838
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactctaatg 256  Q
    |||||||||||||||||| |||| ||||||| |||  ||| || | |||||||| ||| ||| ||||||||||||||||||||||||    
T  10014924 attgtttttgaccaataaaaagagagaaaaacaaaattgtcaccaaagttgtcatcaattggatgtacaaatatcactactctaatg 10014838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 26041412 - 26041487
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatca 245  Q
    ||||||||||||||||||||||| ||||||| |||| ||| || | ||||||||  |||||| |||||||||||||    
T  26041412 attgtttttgaccaataagaagagagaaaaacaaagttgtcactaaagttgtcataaaatggatgtacaaatatca 26041487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 40077357 - 40077432
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttg-tcacaaatggttgtacaaatatca 245  Q
    |||||||||||||||||||||||||||||||| | | ||| | || ||||| | |||||||||||| |||||||||    
T  40077357 attgtttttgaccaataagaagaaagaaaaaggaggttgtcataaaagttgttaacaaatggttgttcaaatatca 40077432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 44175647 - 44175680
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaa 204  Q
    ||||||||||||||||||||||||||||||||||    
T  44175647 attgtttttgaccaataagaagaaagaaaaagaa 44175680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 32315928 - 32316008
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtc-acaaatggttgtacaaatatcactact 250  Q
    ||||||||||||||||||||||| ||||||| || | ||| |||| |||||||  ||||| ||||| ||||||||| ||||    
T  32315928 attgtttttgaccaataagaagagagaaaaacaatgttgtcacaaaagttgtcgtcaaatagttgttcaaatatcattact 32316008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 155948 - 155869
Alignment:
Q  173 tgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||||||| | ||| ||||||||  ||| |||  ||| |||||||  |||||||||| ||||||||||||||||    
T  155948 tgtttttgaccaatgaaaagtaagaaaaaagaagttgtatcaaaagttgtctaaaatggttgttcaaatatcactactct 155869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 8742485 - 8742567
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactct 252  Q
    ||||||| ||| ||||||||||| ||||||| || | ||| || | |||||||| ||| ||| ||||||||||||||||||||    
T  8742485 attgtttatgatcaataagaagagagaaaaacaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactct 8742567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 37385202 - 37385120
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactct 252  Q
    ||||||||||||||||||||| | |||| || || | ||| || | |||||||| ||| ||| ||||||||||||||||||||    
T  37385202 attgtttttgaccaataagaaaagagaagaacaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactct 37385120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 37351959 - 37351878
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||||| |||| |||||||  ||  ||| |||| |||| |  |||||| |||| ||||||||||||||||    
T  37351959 attgtttttgaccaataaaaagagagaaaaaagaaattgtcacaaaagttatatcaaatgattgttcaaatatcactactct 37351878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 42431825 - 42431906
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactc 251  Q
    ||||||||||||||||||||||| ||||||| || | ||| || | ||||||||   ||||| ||||||||||||| |||||    
T  42431825 attgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattactc 42431906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 47683894 - 47683977
Alignment:
Q  173 tgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcac-aaatggttgtacaaatatcactactctaat 255  Q
    ||||||||||||||||||||| ||||| |||| | |||  ||| ||||||||| |||||||||||||||||||| |||||||||    
T  47683894 tgtttttgaccaataagaagagagaaagagaaggttgtctcaaaagttgtcacaaaatggttgtacaaatatcattactctaat 47683977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 43460490 - 43460568
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcac-aaatggttgtacaaatatcacta 248  Q
    ||||||||||||||||||||||| |||||| ||| |||||  ||| ||||||||| ||| |||||||||||||||||||    
T  43460490 attgtttttgaccaataagaagagagaaaatgaaggctgtcccaaaagttgtcacaaaaaggttgtacaaatatcacta 43460568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 3025174 - 3025095
Alignment:
Q  20 ttataatttttgtgagtactggtgaacatattaattatgtttaataataattatgttacatctaatcatataattttaat 99  Q
    |||| ||| |||||||| |||| ||||||||||||||||||||| ||||||||| |||  ||||| ||||||||| ||||    
T  3025174 ttatcattattgtgagttctggagaacatattaattatgtttaaaaataattattttatgtctaagcatataattataat 3025095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 54233470 - 54233389
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactc 251  Q
    ||||||||||||||||||||||| ||||||| || | ||| || | |||||||| ||| ||| |||||||||||||||||||    
T  54233470 attgtttttgaccaataagaagagagaaaaacaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactc 54233389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 23906956 - 23906872
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactctaa 254  Q
    ||||||||||||||||||||||| ||||||  || | ||| || | |||||||| ||| ||| ||||||||||||||||||||||    
T  23906956 attgtttttgaccaataagaagagagaaaagcaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactctaa 23906872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 28263647 - 28263722
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatca 245  Q
    ||||||||||||||||||||||||||||||| |||| ||| || | ||||||||  |||||| || ||||||||||    
T  28263647 attgtttttgaccaataagaagaaagaaaaataaagttgtcactaaagttgtcatgaaatggatgaacaaatatca 28263722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 217 - 252
Target Start/End: Original strand, 46574289 - 46574324
Alignment:
Q  217 agttgtcacaaatggttgtacaaatatcactactct 252  Q
    ||||||||||||||||||||||||||||||||||||    
T  46574289 agttgtcacaaatggttgtacaaatatcactactct 46574324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 1031396 - 1031322
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatca 245  Q
    ||||||||||||||||||||||||||||||| |||| ||| | || ||||||  |||||  |||| |||||||||    
T  1031396 attgtttttgaccaataagaagaaagaaaaataaagttgtcataaaagttgtaccaaataattgttcaaatatca 1031322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 7231975 - 7231893
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactcta 253  Q
    |||||||||||||||| | |||| |||||||  ||  ||| |||| ||||||  ||||||||||| |||||||||||||||||    
T  7231975 attgtttttgaccaatgaaaagagagaaaaaataaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactcta 7231893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 41112041 - 41111959
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactcta 253  Q
    |||||||||||||||| | |||| ||| |||  ||| ||||| || ||||||| ||||||| ||| |||||||||||||||||    
T  41112041 attgtttttgaccaatgaaaagagagagaaaagaagttgttaaaaaagttgtctcaaatggatgttcaaatatcactactcta 41111959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 46092928 - 46092847
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||||| |||| || |||| |||| ||| |  ||| |||| | |||||||||| ||||||||||||||||    
T  46092928 attgtttttgaccaataaaaagagaggaaaaaaaagttgtaatgataattgtaaaaaatggttgttcaaatatcactactct 46092847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 3484893 - 3484929
Alignment:
Q  217 agttgtcacaaatggttgtacaaatatcactactcta 253  Q
    |||||||||||||||||||||| ||||||||||||||    
T  3484893 agttgtcacaaatggttgtacatatatcactactcta 3484929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 28300615 - 28300535
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactc 251  Q
    |||||||||||||||| | |||| ||||||  |||| ||| |||| ||||||  || |||||||| |||||||||||||||    
T  28300615 attgtttttgaccaatgaaaagagagaaaataaaagttgtcacaagagttgtatcatatggttgttcaaatatcactactc 28300535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 38692295 - 38692226
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    ||||||||||||||||||||||| ||||||||||||            |||||| |||||||||||||||||||||||||||    
T  38692295 attgtttttgaccaataagaagatagaaaaagaaag------------ttgtcataaatggttgtacaaatatcactactct 38692226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 622428 - 622345
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactctaa 254  Q
    |||||||| ||||||| |||||| ||||||  |||| ||| |  | |||||||||||||||||||  | |||||||||||||||    
T  622428 attgttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactctaa 622345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 34021432 - 34021357
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatca 245  Q
    ||||||||||||||||||||||| ||||||| |||| ||| || | ||||||||   ||||| |||||||||||||    
T  34021432 attgtttttgaccaataagaagagagaaaaacaaagttgtcactaaagttgtcatggaatggatgtacaaatatca 34021357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 52454061 - 52453986
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatca 245  Q
    ||||||||||||||||||||||| ||| ||| |||| ||| || | ||||||||  |||||| |||||||||||||    
T  52454061 attgtttttgaccaataagaagagagagaaacaaagttgtcactaaagttgtcatgaaatggatgtacaaatatca 52453986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 1295434 - 1295508
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatca 245  Q
    |||||||||||||||| | |||| |||||||||| | ||| | ||| |||||  ||||||||||| |||||||||    
T  1295434 attgtttttgaccaatgaaaagatagaaaaagaaggttgtcaaaattgttgtagcaaatggttgttcaaatatca 1295508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 44910806 - 44910888
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcac-aaatggttgtacaaatatcactactct 252  Q
    ||||||||||||||||||||||| |||||| | ||| ||| |||| | ||||||| ||| | |||| ||||||||| ||||||    
T  44910806 attgtttttgaccaataagaagagagaaaatgtaagttgtcacaaaaattgtcactaaaagattgttcaaatatcattactct 44910888  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 47849772 - 47849854
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactcta 253  Q
    |||||||||||||||| | |||| |||||||  | ||||| |||| ||||||  ||||| | ||| |||||||||||||||||    
T  47849772 attgtttttgaccaatgaaaagagagaaaaaagaggctgtcacaagagttgtttcaaatagatgttcaaatatcactactcta 47849854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 11173552 - 11173633
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||| | |||| |||||||  ||| ||| |||| ||||||  ||||||||||| ||||||| | ||||||    
T  11173552 attgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatattattactct 11173633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 20380858 - 20380777
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||| | |||  |||||||  ||| ||| |||| ||||||   |||||||||| ||||||||||||||||    
T  20380858 attgtttttgaccaatgaaaagtgagaaaaaagaagttgtcacaaaagttgtttaaaatggttgttcaaatatcactactct 20380777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 46473230 - 46473311
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||| | |||| |||||||  ||| ||| | || ||||||  ||||||||||| ||||||||| ||||||    
T  46473230 attgtttttgaccaatgaaaagagagaaaaaagaagttgtcataaaagttgtatcaaatggttgttcaaatatcattactct 46473311  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 48405461 - 48405416
Alignment:
Q  201 agaaagctgttacaatagttgtcacaaa-tggttgtacaaatatca 245  Q
    |||||| |||||||| |||||||||||| |||||||||||||||||    
T  48405461 agaaagttgttacaaaagttgtcacaaaatggttgtacaaatatca 48405416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 201
Target Start/End: Complemental strand, 49114568 - 49114539
Alignment:
Q  172 ttgtttttgaccaataagaagaaagaaaaa 201  Q
    ||||||||||||||||||||||||||||||    
T  49114568 ttgtttttgaccaataagaagaaagaaaaa 49114539  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 53932360 - 53932279
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactc 251  Q
    |||||||||||| |||||||||| ||||||  || | ||| || | |||||||| ||| ||| |||||||||||||||||||    
T  53932360 attgtttttgactaataagaagatagaaaagcaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactc 53932279  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 32755780 - 32755863
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcac-aaatggttgtacaaatatcactactcta 253  Q
    |||||||||||||||| | |||| ||||||| || |||||  ||| ||||||||| ||||||||||| ||||||||||||||||    
T  32755780 attgtttttgaccaatcaaaagagagaaaaataaggctgtctcaaaagttgtcacaaaatggttgtagaaatatcactactcta 32755863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 10749648 - 10749568
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactc 251  Q
    |||||||||||||||||  |||| || ||||| ||| ||| |  |||||||||| |||||||||| |||||||||||||||    
T  10749648 attgtttttgaccaatagaaagagaggaaaaggaagttgtcatgatagttgtcaaaaatggttgttcaaatatcactactc 10749568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 36909812 - 36909732
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactc 251  Q
    ||||||||||||||||||||||| ||||||| |||| ||| |  | ||||||   |||||| |||||||||||||||||||    
T  36909812 attgtttttgaccaataagaagagagaaaaacaaagttgtcatcaaagttgtatgaaatggatgtacaaatatcactactc 36909732  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 254
Target Start/End: Complemental strand, 34261947 - 34261910
Alignment:
Q  217 agttgtcacaaatggttgtacaaatatcactactctaa 254  Q
    |||||||||||||||||||||| |||||||||||||||    
T  34261947 agttgtcacaaatggttgtacatatatcactactctaa 34261910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 2308289 - 2308213
Alignment:
Q  175 tttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactc 251  Q
    |||||| ||||| |||||| |||||| ||||| ||| |  | |||||||| | ||||||||||||||||||||||||    
T  2308289 tttttggccaatgagaagagagaaaatgaaagttgtcatcaaagttgtcatatatggttgtacaaatatcactactc 2308213  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 546354 - 546271
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactctaa 254  Q
    |||||||| ||||||| |||||| ||||||  |||| ||| |  | |||||||||||||||||||  | |||||||||||||||    
T  546354 attgttttggaccaatgagaagagagaaaataaaagttgtcaacaaagttgtcacaaatggttgtcaatatatcactactctaa 546271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 37966458 - 37966533
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatca 245  Q
    ||||||||||||||||||||||| ||||||| || | ||| || | ||||||||  |||||| |||||||||||||    
T  37966458 attgtttttgaccaataagaagagagaaaaacaaggttgtcactaaagttgtcatgaaatggatgtacaaatatca 37966533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 44484625 - 44484550
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatca 245  Q
    ||||||||||||||||||||||| ||||||| |||| ||| || | ||||||||  |||| | |||||||||||||    
T  44484625 attgtttttgaccaataagaagagagaaaaacaaagttgtcactaaagttgtcataaaattgatgtacaaatatca 44484550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 253
Target Start/End: Complemental strand, 2013254 - 2013172
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactcta 253  Q
    |||||||||||||||| | |||| ||| |||  ||| ||| |||| ||||||| ||||||| |||  ||||||||||||||||    
T  2013254 attgtttttgaccaatgaaaagagagagaaaataagttgtcacaagagttgtctcaaatggatgttaaaatatcactactcta 2013172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 6742375 - 6742297
Alignment:
Q  175 tttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtc-acaaatggttgtacaaatatcactactct 252  Q
    ||||||||||||||||||| ||| ||||||   ||| |||| ||||||| ||||||| |||||||| ||||| ||||||    
T  6742375 tttttgaccaataagaagagagagaaagaagattgtcacaaaagttgtcaacaaatgattgtacaattatcattactct 6742297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 10389323 - 10389401
Alignment:
Q  173 tgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactc 251  Q
    |||||| ||||||| |||||| |||||  |||||  || || | ||||||| |||||||||||||| ||||||||||||    
T  10389323 tgttttggaccaatgagaagagagaaagtgaaagtcgtcaccaaagttgtcccaaatggttgtacatatatcactactc 10389401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 42665727 - 42665697
Alignment:
Q  225 caaatggttgtacaaatatcactactctaat 255  Q
    |||||||||||||||||||||||||||||||    
T  42665727 caaatggttgtacaaatatcactactctaat 42665697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 43791760 - 43791678
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcac-aaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||||| |||| |||||| | | | ||| |||| ||||||||| ||| |||||| ||||||||| ||||||    
T  43791760 attgtttttgaccaataaaaagagagaaaaggtaggttgtcacaaaagttgtcactaaaaggttgttcaaatatcattactct 43791678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 3091843 - 3091924
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||| | |||| |||||||  ||| ||| |||| ||||||  |||||  |||| ||||||||||||||||    
T  3091843 attgtttttgaccaatgaaaagagagaaaaaagaagttgtcacaaaagttgtatcaaataattgttcaaatatcactactct 3091924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 13104581 - 13104662
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||| | |||| |||||||  ||| ||| |||| | ||||| || |||||||| |||||| |||||||||    
T  13104581 attgtttttgaccaatgaaaagagagaaaaaataagttgtcacaaaaattgtctcatatggttgttcaaataacactactct 13104662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 18949108 - 18949141
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaa 204  Q
    |||||||||||||||||| |||||||||||||||    
T  18949108 attgtttttgaccaataaaaagaaagaaaaagaa 18949141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 22390254 - 22390335
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||| | |||| ||| |||  ||| ||| |||| ||||||| ||||||| ||| |||||||| |||||||    
T  22390254 attgtttttgaccaatgaaaagagagagaaaagaagttgtcacaagagttgtctcaaatggatgttcaaatatctctactct 22390335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 32750100 - 32750181
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||||||||||| | |||| |||||||  ||| ||| |||| | ||||| || |||||||| |||||| |||||||||    
T  32750100 attgtttttgaccaatgaaaagagagaaaaaataagttgtcacaaaaattgtctcatatggttgttcaaataacactactct 32750181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 21390 - 21469
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactact 250  Q
    ||||||||| || |||||||||| ||| ||| || | |||  |||||||||||| ||||||||||| |||||||||||||    
T  21390 attgtttttaactaataagaagatagagaaaaaaggttgtctcaatagttgtcataaatggttgtataaatatcactact 21469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 21542 - 21469
Alignment:
Q  172 ttgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatca 245  Q
    ||||||| ||||||| |||||| |||||| ||||| |||||  | |||||||||||||| ||||||| ||||||    
T  21542 ttgttttggaccaatgagaagagagaaaatgaaagttgttatcaaagttgtcacaaatgattgtacatatatca 21469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 156008 - 156089
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactct 252  Q
    |||||||| ||||||| |||||| |||||| || || ||| |  | ||||||| |||||||||||||| |||||||||||||    
T  156008 attgttttggaccaatgagaagagagaaaatgagagttgtcatcaaagttgtcccaaatggttgtacatatatcactactct 156089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 32081 - 32158
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtcacaaatggttgtacaaatatcactactc 251  Q
    ||||||||||| |||||| ||||  |||||| || | |||||||| | |||||||||||  ||||||||||||||||||||    
T  32081 attgtttttgatcaataa-aaga--gaaaaataaggttgttacaaaaattgtcacaaataattgtacaaatatcactactc 32158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 204416 - 204335
Alignment:
Q  171 attgtttttgaccaataagaagaaagaaaaagaaagctgttacaatagttgtca-caaatggttgtacaaatatcactactc 251  Q
    ||||||||||||||||||||||| |||||||| |   ||| |||| |||||||| |||| ||||||  |||||||| |||||    
T  204416 attgtttttgaccaataagaagagagaaaaagtagattgtcacaaaagttgtcaccaaaaggttgtttaaatatcattactc 204335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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