View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15108_low_10 (Length: 377)

Name: NF15108_low_10
Description: NF15108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15108_low_10
NF15108_low_10
[»] chr1 (11 HSPs)
chr1 (1-360)||(6524628-6524987)
chr1 (234-352)||(6503500-6503618)
chr1 (234-358)||(6511114-6511238)
chr1 (231-358)||(6498175-6498302)
chr1 (249-358)||(47774484-47774593)
chr1 (230-358)||(47744488-47744616)
chr1 (230-358)||(47716724-47716852)
chr1 (234-358)||(6515537-6515661)
chr1 (230-358)||(47711973-47712101)
chr1 (230-358)||(47758871-47758999)
chr1 (298-358)||(47770625-47770685)
[»] scaffold0341 (2 HSPs)
scaffold0341 (234-352)||(5182-5300)
scaffold0341 (234-358)||(12795-12918)
[»] chr5 (7 HSPs)
chr5 (236-352)||(28874995-28875111)
chr5 (255-354)||(28855064-28855163)
chr5 (236-358)||(28829383-28829505)
chr5 (236-352)||(28860425-28860541)
chr5 (266-358)||(27369235-27369327)
chr5 (66-151)||(28829775-28829860)
chr5 (123-151)||(27369453-27369481)


Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 6524628 - 6524987
Alignment:
Q  1 ttaacttgttttcatgtgtagttcaagaaggagaagaagatgaagatgttgaaattgaaatttcggagtcattgcaattcacttttgacacaataagaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6524628 ttaacttgttttcatgtgtagttcaagaaggagaagaagatgaagatgttgaaattgaaatttcggagtcattgcaattcacttttgacacaataagaga 6524727  T
Q  101 tgcaacagatgattttgctgcctctaataaacttggacaaggtggatttgggacggtttacaaagtaagcaacgctgttaaatatcacttactactcagt 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6524728 tgcaacagatgactttgctgcctctaataaacttggacaaggtggatttgggacggtttacaaagtaagcaacgctgttaaatatcacttactactcagt 6524827  T
Q  201 tacttgttgagaacatattattcatgactaatatattttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6524828 tacttgttgagaacatattattcatgactaatatattttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggcc 6524927  T
Q  301 aaggagatttagaatttaagaatgaagtagttttagtggctaaacttcaacatcgaaact 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6524928 aaggagatttagaatttaagaatgaagtagttttagtggctaaacttcaacatcgaaact 6524987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 234 - 352
Target Start/End: Complemental strand, 6503618 - 6503500
Alignment:
Q  234 tattttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagtagttt 333  Q
    |||||||||||||| |||  ||||||||||||| ||| |||||||||||| || | | ||||||| |||||||||| ||| ||||||||||||||  |||    
T  6503618 tattttcagggtaggctcttcaatggacaagaggttgctgtcaaaaggttatcaatgaattctggacaaggagattcagagtttaagaatgaagtgtttt 6503519  T
Q  334 tagtggctaaacttcaaca 352  Q
    |||| ||||||||||||||    
T  6503518 tagttgctaaacttcaaca 6503500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 234 - 358
Target Start/End: Complemental strand, 6511238 - 6511114
Alignment:
Q  234 tattttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagtagttt 333  Q
    ||||||||||||||  || |||| || |||||| ||| |||||||||||| || | | |||| || ||||||||| |||| ||||||||||||||| |||    
T  6511238 tattttcagggtaggttctccaacgggcaagaggttgctgtcaaaaggttatcaatgaattccggacaaggagatctagagtttaagaatgaagtatttt 6511139  T
Q  334 tagtggctaaacttcaacatcgaaa 358  Q
    ||||||||||||||||||| |||||    
T  6511138 tagtggctaaacttcaacaccgaaa 6511114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 358
Target Start/End: Complemental strand, 6498302 - 6498175
Alignment:
Q  231 atatattttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagtag 330  Q
    ||||||||||||||||| ||  |||||||||||||||||| ||| ||||||||||| | |  ||| || ||||||||||  || ||||||||||| |||     
T  6498302 atatattttcagggtaggctatccaatggacaagagattgctgttaaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtac 6498203  T
Q  331 ttttagtggctaaacttcaacatcgaaa 358  Q
    |||| |||||||| |||||||| |||||    
T  6498202 ttttggtggctaagcttcaacaccgaaa 6498175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 249 - 358
Target Start/End: Original strand, 47774484 - 47774593
Alignment:
Q  249 ctccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagtagttttagtggctaaacttc 348  Q
    ||||| |||||||||  |||||  |||||||| ||||| |  ||||||| |||||||||| | |||||||| ||||||||| ||||||| || |||||||    
T  47774484 ctccctaatggacaaatgattgcggtcaaaagattgtccaaagattctgaccaaggagatgtggaatttaaaaatgaagtacttttagtagccaaacttc 47774583  T
Q  349 aacatcgaaa 358  Q
    ||||||||||    
T  47774584 aacatcgaaa 47774593  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 358
Target Start/End: Complemental strand, 47744616 - 47744488
Alignment:
Q  230 aatatattttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagta 329  Q
    ||||||||| ||||||| |||| ||  |||||||| |||||  |||||||||||||| |   |||| || ||||| ||| | |||||||||||||||||     
T  47744616 aatatatttgcagggtatactcgccggtggacaagtgattgcggtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtg 47744517  T
Q  330 gttttagtggctaaacttcaacatcgaaa 358  Q
     ||||||| ||||| ||||||||||||||    
T  47744516 cttttagtcgctaagcttcaacatcgaaa 47744488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 358
Target Start/End: Complemental strand, 47716852 - 47716724
Alignment:
Q  230 aatatattttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagta 329  Q
    ||||||||| ||||||| |||| ||  |||||||| |||||   ||||||||||||| |   |||| || ||||| ||| | |||||||||||||||||     
T  47716852 aatatatttacagggtatactcgccggtggacaagtgattgcgatcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtg 47716753  T
Q  330 gttttagtggctaaacttcaacatcgaaa 358  Q
     ||||||| ||||| ||||||||||||||    
T  47716752 cttttagtcgctaagcttcaacatcgaaa 47716724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 358
Target Start/End: Complemental strand, 6515661 - 6515537
Alignment:
Q  234 tattttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagtagttt 333  Q
    |||||| ||||||| ||| | ||||||| ||| || | | |||||||||| || | | ||||||| ||||||||| |||| ||||||||||| ||  |||    
T  6515661 tatttttagggtaggctctctaatggactagaaatcgctatcaaaaggttatcaatgaattctggacaaggagatctagagtttaagaatgaggtgtttt 6515562  T
Q  334 tagtggctaaacttcaacatcgaaa 358  Q
    |  |||||||||||||||| |||||    
T  6515561 tcctggctaaacttcaacaccgaaa 6515537  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 358
Target Start/End: Complemental strand, 47712101 - 47711973
Alignment:
Q  230 aatatattttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagta 329  Q
    ||||||||| ||||||| |||  ||  ||||||||  ||||  |||||||||||||| |   |||| || ||||| ||| | |||||||||||||||||     
T  47712101 aatatatttgcagggtatacttgccggtggacaagtcattgcagtcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtg 47712002  T
Q  330 gttttagtggctaaacttcaacatcgaaa 358  Q
     ||||||| ||||| ||||||||||||||    
T  47712001 cttttagtcgctaagcttcaacatcgaaa 47711973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 358
Target Start/End: Complemental strand, 47758999 - 47758871
Alignment:
Q  230 aatatattttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagta 329  Q
    ||||||||| ||||||| |||  ||  ||||||||  ||||  |||||||||||||| |   |||| || || || ||| | |||||||||||||||||     
T  47758999 aatatatttgcagggtatacttgccggtggacaagtcattgcagtcaaaaggttgtcaacaaattcaggacagggggatgttgaatttaagaatgaagtg 47758900  T
Q  330 gttttagtggctaaacttcaacatcgaaa 358  Q
     ||||||| ||||| ||||||||||||||    
T  47758899 cttttagtcgctaagcttcaacatcgaaa 47758871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 47770625 - 47770685
Alignment:
Q  298 gccaaggagatttagaatttaagaatgaagtagttttagtggctaaacttcaacatcgaaa 358  Q
    ||||||||||| | |||||||| ||||||||| | ||||| || || ||||||||||||||    
T  47770625 gccaaggagatgtggaatttaaaaatgaagtattattagtagccaagcttcaacatcgaaa 47770685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 234 - 352
Target Start/End: Complemental strand, 5300 - 5182
Alignment:
Q  234 tattttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagtagttt 333  Q
    |||||||||||||| |||  ||||||||||||| ||| |||||||||||| || | | ||||||| |||||||||| ||| ||||||||||||||  |||    
T  5300 tattttcagggtaggctcttcaatggacaagaggttgctgtcaaaaggttatcaatgaattctggacaaggagattcagagtttaagaatgaagtgtttt 5201  T
Q  334 tagtggctaaacttcaaca 352  Q
    |||| ||||||||||||||    
T  5200 tagttgctaaacttcaaca 5182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 234 - 358
Target Start/End: Complemental strand, 12918 - 12795
Alignment:
Q  234 tattttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagtagttt 333  Q
    ||||||||||||||  || |||| || |||||| ||| |||||||||||| || | | |||| || ||||||||| |||| ||||||||||||||| |||    
T  12918 tattttcagggtaggttctccaacgggcaagaggttgctgtcaaaaggttatcaatgaattccggacaaggagatctagagtttaagaatgaagta-ttt 12820  T
Q  334 tagtggctaaacttcaacatcgaaa 358  Q
    ||||||||||||||||||| |||||    
T  12819 tagtggctaaacttcaacaccgaaa 12795  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 236 - 352
Target Start/End: Complemental strand, 28875111 - 28874995
Alignment:
Q  236 ttttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagtagtttta 335  Q
    |||||||||||| ||| | |||||||||  ||| | ||| ||||||||||| | | ||||||||||||||||| |||||||||||||||||||  |||||    
T  28875111 ttttcagggtaggctctctaatggacaaacgatcgctgttaaaaggttgtccatgaattctggccaaggagatatagaatttaagaatgaagtgctttta 28875012  T
Q  336 gtggctaaacttcaaca 352  Q
     |||| |||||||||||    
T  28875011 atggccaaacttcaaca 28874995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 255 - 354
Target Start/End: Complemental strand, 28855163 - 28855064
Alignment:
Q  255 aatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagtagttttagtggctaaacttcaacatc 354  Q
    |||||||||| |||||  |||||||||||||| | | ||||||||||||||||| | ||||||||||||||| || | ||  ||||||||||||||||||    
T  28855163 aatggacaagtgattgccgtcaaaaggttgtccatgaattctggccaaggagatctggaatttaagaatgaattaatcttgatggctaaacttcaacatc 28855064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 236 - 358
Target Start/End: Complemental strand, 28829505 - 28829383
Alignment:
Q  236 ttttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagtagtttta 335  Q
    |||||||||||||||| | |||||||||| |||||  || |||||||| || |   ||||||| ||||||||| ||||||||||||| ||||||  |||     
T  28829505 ttttcagggtagactctctaatggacaagtgattgcggtgaaaaggttatccataaattctggtcaaggagatctagaatttaagaacgaagtacgtttg 28829406  T
Q  336 gtggctaaacttcaacatcgaaa 358  Q
    ||||| ||||||||||| |||||    
T  28829405 gtggccaaacttcaacaccgaaa 28829383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 236 - 352
Target Start/End: Complemental strand, 28860541 - 28860425
Alignment:
Q  236 ttttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagtagtttta 335  Q
    |||||||||||| ||| | |||||||||| ||| | ||| ||||||||||| |   |||||||||||||||||  ||| ||||||||||||||  |||||    
T  28860541 ttttcagggtaggctctctaatggacaagcgatcgctgttaaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgctttta 28860442  T
Q  336 gtggctaaacttcaaca 352  Q
     |||| |||||||||||    
T  28860441 atggccaaacttcaaca 28860425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 266 - 358
Target Start/End: Complemental strand, 27369327 - 27369235
Alignment:
Q  266 gattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagtagttttagtggctaaacttcaacatcgaaa 358  Q
    ||||| ||| ||||||||||| |   |||||| |||||||||| | || ||||| ||||||||| ||||||| || |||||||||||||||||    
T  27369327 gattgctgtgaaaaggttgtcaacaaattctgaccaaggagatgttgagtttaaaaatgaagtacttttagtagccaaacttcaacatcgaaa 27369235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 151
Target Start/End: Complemental strand, 28829860 - 28829775
Alignment:
Q  66 gagtcattgcaattcacttttgacacaataagagatgcaacagatgattttgctgcctctaataaacttggacaaggtggatttgg 151  Q
    |||||||| ||||| |  |||||||| ||||||| ||| ||| |||||||   ||  |||||||||||||| ||||||||||||||    
T  28829860 gagtcattacaatttaactttgacactataagagttgctacaaatgatttctgtgattctaataaacttgggcaaggtggatttgg 28829775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 27369481 - 27369453
Alignment:
Q  123 tctaataaacttggacaaggtggatttgg 151  Q
    |||||||||||||||||||||||||||||    
T  27369481 tctaataaacttggacaaggtggatttgg 27369453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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