View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15108_low_11 (Length: 369)

Name: NF15108_low_11
Description: NF15108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15108_low_11
NF15108_low_11
[»] chr1 (10 HSPs)
chr1 (16-148)||(46614384-46614516)
chr1 (19-144)||(43361343-43361469)
chr1 (29-144)||(43360391-43360507)
chr1 (244-336)||(46614207-46614299)
chr1 (29-104)||(23201855-23201930)
chr1 (30-88)||(19067352-19067410)
chr1 (30-88)||(19115242-19115300)
chr1 (31-86)||(41318522-41318577)
chr1 (31-59)||(5042197-5042225)
chr1 (31-59)||(11523223-11523251)
[»] chr7 (5 HSPs)
chr7 (31-142)||(41203810-41203921)
chr7 (29-104)||(3562980-3563055)
chr7 (30-88)||(32277445-32277503)
chr7 (29-86)||(37031324-37031380)
chr7 (31-59)||(14238715-14238743)
[»] chr2 (1 HSPs)
chr2 (31-104)||(9223955-9224028)
[»] chr5 (2 HSPs)
chr5 (30-88)||(38923874-38923932)
chr5 (31-59)||(32657962-32657990)
[»] chr3 (3 HSPs)
chr3 (30-88)||(48519316-48519374)
chr3 (30-86)||(13848908-13848964)
chr3 (31-85)||(34672599-34672652)
[»] chr6 (2 HSPs)
chr6 (28-56)||(12188399-12188427)
chr6 (31-59)||(27899082-27899110)
[»] chr4 (1 HSPs)
chr4 (31-59)||(33572056-33572084)


Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 46614516 - 46614384
Alignment:
Q  16 gtgttgtttggtttaagagaaatagaagagagagaagtgtgtttgttttttataatgacaaaaatacccttaaatgaaaagctcaatataatttttattt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46614516 gtgttgtttggtttaagagaaatagaagagagagaagtgtgtttattttttataatgacaaaaatacccttaaatgaaaagctcaatataatttttattt 46614417  T
Q  116 tgaatttgatttcttattaaacttattcaactt 148  Q
    |||||||||||||||||||||||||||||||||    
T  46614416 tgaatttgatttcttattaaacttattcaactt 46614384  T

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Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 43361469 - 43361343
Alignment:
Q  19 ttgtttggtttaagagaaatagaagagagagaagtgtgtttgttttttataatgacaaaaatacccttaaatgaaaagctcaatataatttttattttga 118  Q
    ||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||    
T  43361469 ttgtttggtttaagagaaaaagaagagagagaagtgtgcttgctttttataatggcaaaaatacccttaaatgaaaagctcaatattttttttattttga 43361370  T
Q  119 atttgatttc-ttattaaacttattca 144  Q
    |||||||||| |||| |||||||||||    
T  43361369 atttgatttctttatgaaacttattca 43361343  T

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Target: chr1; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 43360391 - 43360507
Alignment:
Q  29 taagagaaatagaagagagagaagtgtgtttgttttttataatgacaaaaatacccttaaatgaaaagctcaatataatttttattttgaatttgatttc 128  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  43360391 taagagaaaaagaagagagagaagtgtgcttgctttttataatggcaaaaatacccttaaatgaaaagctcaatattttttttattttgaatttgatttc 43360490  T
Q  129 -ttattaaacttattca 144  Q
     |||| |||||||||||    
T  43360491 tttatgaaacttattca 43360507  T

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Target: chr1; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 244 - 336
Target Start/End: Complemental strand, 46614299 - 46614207
Alignment:
Q  244 aaaggaagaaatttattcaataggaaaagaaggaatcatagaaatgatacaaatgtgtaatatagaaaaagagaagggggcactaatgaaaat 336  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  46614299 aaaggaagaaatttattcaatgggaaaagaaggaatcatagaaatgatataaatgtgtaatatagaaaaagagaaaggggcactaatgaaaat 46614207  T

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Target: chr1; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 23201930 - 23201855
Alignment:
Q  29 taagagaaatagaagagagagaagtgtgtttgttttttataatgacaaaaatacccttaaatgaaaagctcaatat 104  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  23201930 taagagaaaaagaagagagagaagtgtgcttgctttttataatgacaaaaatacccttaaatgaaaagctcaatat 23201855  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 19067352 - 19067410
Alignment:
Q  30 aagagaaatagaagagagagaagtgtgtttgttttttataatgacaaaaatacccttaa 88  Q
    |||||||||||||||||||||||||||||| ||||||  ||  ||||||| ||||||||    
T  19067352 aagagaaatagaagagagagaagtgtgtttattttttgaaagaacaaaaacacccttaa 19067410  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 19115242 - 19115300
Alignment:
Q  30 aagagaaatagaagagagagaagtgtgtttgttttttataatgacaaaaatacccttaa 88  Q
    |||||||||||||||||||||||||||||| ||||||  ||  ||||||| ||||||||    
T  19115242 aagagaaatagaagagagagaagtgtgtttattttttgaaagaacaaaaacacccttaa 19115300  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 41318522 - 41318577
Alignment:
Q  31 agagaaatagaagagagagaagtgtgtttgttttttataatgacaaaaataccctt 86  Q
    |||||||||||||||| |||||||||||| | ||||| || |||||||||| ||||    
T  41318522 agagaaatagaagagaaagaagtgtgtttatattttaaaaagacaaaaatatcctt 41318577  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 5042225 - 5042197
Alignment:
Q  31 agagaaatagaagagagagaagtgtgttt 59  Q
    |||||||||||||||||||||||||||||    
T  5042225 agagaaatagaagagagagaagtgtgttt 5042197  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 11523223 - 11523251
Alignment:
Q  31 agagaaatagaagagagagaagtgtgttt 59  Q
    |||||||||||||||||||||||||||||    
T  11523223 agagaaatagaagagagagaagtgtgttt 11523251  T

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Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 41203921 - 41203810
Alignment:
Q  31 agagaaatagaagagagagaagtgtgtttgttttttataatgacaaaaatacccttaaat-gaaaagctcaatataatttttattttgaatttgatttct 129  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||| |||||||| |||||||||| ||||||||||||    
T  41203921 agagaaagagaagagagagaagtgtgtttgttttttataatgac-aaaatacccttaaataaaaaagttcaatatattttttattttcaatttgatttct 41203823  T
Q  130 tattaaacttatt 142  Q
    ||| |||||||||    
T  41203822 tatgaaacttatt 41203810  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 3563055 - 3562980
Alignment:
Q  29 taagagaaatagaagagagagaagtgtgtttgttttttataatgacaaaaatacccttaaatgaaaagctcaatat 104  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  3563055 taagagaaaaagaagagagagaagtgtgcttgctttttataatgacaaaaatacccttaaatgaaaagctcaatat 3562980  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 32277503 - 32277445
Alignment:
Q  30 aagagaaatagaagagagagaagtgtgtttgttttttataatgacaaaaatacccttaa 88  Q
    |||||||||||||||||||||||||||||| ||||||  || |||||||| ||||||||    
T  32277503 aagagaaatagaagagagagaagtgtgtttattttttgaaaggacaaaaacacccttaa 32277445  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 37031324 - 37031380
Alignment:
Q  29 taagagaaatagaagagagagaagtgtgtttgttttttataatgacaaaaataccctt 86  Q
    ||||||||||||||||||||||| |||||||  |||||| |  |||||||||||||||    
T  37031324 taagagaaatagaagagagagaattgtgtttacttttta-atagacaaaaataccctt 37031380  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 14238743 - 14238715
Alignment:
Q  31 agagaaatagaagagagagaagtgtgttt 59  Q
    |||||||||||||||||||||||||||||    
T  14238743 agagaaatagaagagagagaagtgtgttt 14238715  T

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Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 9223955 - 9224028
Alignment:
Q  31 agagaaatagaagagagagaagtgtgtttgttttttataatgacaaaaatacccttaaatgaaaagctcaatat 104  Q
    ||||||||||| |||| ||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||    
T  9223955 agagaaatagatgagaaagaagtgtgcttgctttttataatcacaaaaatacccttaaatgaaaagctcaatat 9224028  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 38923932 - 38923874
Alignment:
Q  30 aagagaaatagaagagagagaagtgtgtttgttttttataatgacaaaaatacccttaa 88  Q
    |||||||||||||||||||||||||||||| ||||||  || |||||||| ||||||||    
T  38923932 aagagaaatagaagagagagaagtgtgtttattttttgaaaggacaaaaacacccttaa 38923874  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 32657962 - 32657990
Alignment:
Q  31 agagaaatagaagagagagaagtgtgttt 59  Q
    |||||||||||||||||||||||||||||    
T  32657962 agagaaatagaagagagagaagtgtgttt 32657990  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 48519374 - 48519316
Alignment:
Q  30 aagagaaatagaagagagagaagtgtgtttgttttttataatgacaaaaatacccttaa 88  Q
    |||||||||||||||||||||||||||||| ||||||  || |||||||| ||||||||    
T  48519374 aagagaaatagaagagagagaagtgtgtttattttttgaaaggacaaaaacacccttaa 48519316  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 13848908 - 13848964
Alignment:
Q  30 aagagaaatagaagagagagaagtgtgtttgttttttataatgacaaaaataccctt 86  Q
    ||||||||||||||||||||||||||||||  ||| || || |||||||||| ||||    
T  13848908 aagagaaatagaagagagagaagtgtgtttaatttgtaaaaagacaaaaatatcctt 13848964  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 34672652 - 34672599
Alignment:
Q  31 agagaaatagaagagagagaagtgtgtttgttttttataatgacaaaaataccct 85  Q
    |||||||||||||||| ||||||||| || ||||||| || ||||||||||||||    
T  34672652 agagaaatagaagagaaagaagtgtgattatttttta-aaagacaaaaataccct 34672599  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 56
Target Start/End: Complemental strand, 12188427 - 12188399
Alignment:
Q  28 ttaagagaaatagaagagagagaagtgtg 56  Q
    |||||||||||||||||||||||||||||    
T  12188427 ttaagagaaatagaagagagagaagtgtg 12188399  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 27899082 - 27899110
Alignment:
Q  31 agagaaatagaagagagagaagtgtgttt 59  Q
    |||||||||||||||||||||||||||||    
T  27899082 agagaaatagaagagagagaagtgtgttt 27899110  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 33572056 - 33572084
Alignment:
Q  31 agagaaatagaagagagagaagtgtgttt 59  Q
    |||||||||||||||||||||||||||||    
T  33572056 agagaaatagaagagagagaagtgtgttt 33572084  T

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