View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15108_low_13 (Length: 334)
Name: NF15108_low_13
Description: NF15108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15108_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 21 - 315
Target Start/End: Complemental strand, 51728935 - 51728641
Alignment:
| Q |
21 |
tgttggagtacccctctggccttatacctttgtacaggtaagaagtacttgtttgtgattcatttcgcgctttgaaattaaatgaatatactagagaaac |
120 |
Q |
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| T |
51728935 |
tgttggagtacccctctggccttatacctttgtacaggtaagaagtacttgtttgtgattcatttcgcgctttgaaattaaatgaatatactagagaaac |
51728836 |
T |
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| Q |
121 |
taatagcttgatttatgctaatcatgatagaggaaccatccatccattgattccaaacatggcttttgtgggatatgttgagacctattcaaatctttac |
220 |
Q |
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| T |
51728835 |
taatagcttgatttatgctaatcatgatagaggaaccatccatccattgattccaaacatggctttcgtgggatacgttgagacctattcaaatctttac |
51728736 |
T |
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| Q |
221 |
tcttcagagtaacgcacaatgtggctttcaggacttgtggatgacaaattcaagcttccaaaagttgaaagaatgctatcacaaactcttaagga |
315 |
Q |
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| T |
51728735 |
tcttcagagttacgcacaatgtggctttcaggacttgtggatgacaagttcaagcttccaaaagttgaaagaatgctatcacaaactcttaagga |
51728641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 119 - 288
Target Start/End: Complemental strand, 51723591 - 51723423
Alignment:
| Q |
119 |
actaatagcttgatttatgctaatcatgatagaggaaccatccatccattgattccaaacatggcttttgtgggatatgttgagacctattcaaatcttt |
218 |
Q |
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| T |
51723591 |
actaatagcttgagtcattctaatcgtgatcggagaactatccatccattgatttcaaacaaggcttttgt-ggatatgttgagagtgtttcaaagctac |
51723493 |
T |
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| Q |
219 |
actcttcagagtaacgcacaatgtggctttcaggacttgtggatgacaaattcaagcttccaaaagttga |
288 |
Q |
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| T |
51723492 |
actctttagagctatgctcgatattgctttacggacttgtagatgacaatttcaagcttgcaaaagttga |
51723423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 19059514 - 19059587
Alignment:
| Q |
147 |
atagaggaaccatccatccattgattccaaacatggcttttgtgggatatgttgagacctattcaaatctttac |
220 |
Q |
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| T |
19059514 |
atagaggaactgttcatccattgattccaaacatggcctttgtgggttatgttgagagtgtttcaaatctttac |
19059587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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