View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15108_low_14 (Length: 325)
Name: NF15108_low_14
Description: NF15108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15108_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 311
Target Start/End: Complemental strand, 41016934 - 41016634
Alignment:
| Q |
11 |
caaagggtttgaatattgaaggataccaagttgagggtttatcaattggaggacatgaaacttgtgttattttttccaactttagagttgcttttgatat |
110 |
Q |
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| T |
41016934 |
caaagggtttgaatattgaaggataccaagttgagggtttatcaattggaggacatgaaacttgtgttattttttccaactttagagttgcttttgatat |
41016835 |
T |
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| Q |
111 |
tggtcgttgtccacctcgtgctgtttctatggattttcttttgatctctcatgctcatatggatcacattgttagtttctctctttattttcattcacat |
210 |
Q |
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| T |
41016834 |
tggtcgttgtccacctcgtgctgtttctatggattttcttttgatctctcatgctcatatggatcacattgttagtttctctctttattttcattcacat |
41016735 |
T |
|
| Q |
211 |
aatgttattttattatgctctgtttggattgatttatttgcgcgaaatcttgtttgaatgttagggagaatttatgaaaacaggttatgatatgtttata |
310 |
Q |
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| T |
41016734 |
aatgttattttattatgctctgtttggattgatttatttgcgcgaaatcttgtttgaatgttagggagaatttatgaaaacaggttatgatatgtttata |
41016635 |
T |
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| Q |
311 |
a |
311 |
Q |
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| T |
41016634 |
a |
41016634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 41018677 - 41018379
Alignment:
| Q |
11 |
caaagggtttgaatattgaaggataccaagttgagggtttatcaattggaggacatgaaacttgtgttattttttccaactttagagttgcttttgatat |
110 |
Q |
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| T |
41018677 |
caaagggtttgaatattgaaggataccaagttgagagtttatcaattggaggacatgaaatttgtgttattttttccaactttagaattgcttttgatat |
41018578 |
T |
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| Q |
111 |
tggtcgttgtccacctcgtgctgtttctatggattttcttttgatctctcatgctcatatggatcacattgttagtttctctctttattttcattcacat |
210 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41018577 |
tggtcgttgtccacctcgttttgtttctatggattttcttttgatctctcatgctcatatgtttcacattgttagtttctctctttattttcattcacat |
41018478 |
T |
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| Q |
211 |
aatgttattttattatgctctgtttggattgatttatttgcgcgaaatcttgtttgaatgttagggagaatttatgaaaacaggttatgatatgtttat |
309 |
Q |
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| T |
41018477 |
aatgttattatattatgctctgtttggattgatttatttgcgtgaaatcttgtttgactgttacagagaacttataaaaacatgttacgatgtgtttat |
41018379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 12114714 - 12114535
Alignment:
| Q |
11 |
caaagggtttgaatattgaaggataccaagttgagggtttatcaattggaggacatgaaacttgtgttattttttccaactttagagttgcttttgatat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12114714 |
caaagggtttgaatattgaaggataccaagttgagggtttatcaattggaggacatgaaacttgtgttattttttcacactttagagttgcttttgatat |
12114615 |
T |
|
| Q |
111 |
tggtcgttgtccacctcgtgctgtttctatggattttcttttgatctctcatgctcatatggatcacattgttagtttct |
190 |
Q |
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| T |
12114614 |
tggtcgttgtccacctcgtgctgtttctatggattttcttttgatctctcatgctcatatggatcacattgttagtttct |
12114535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 29635448 - 29635404
Alignment:
| Q |
267 |
aatgttagggagaatttatgaaaacaggttatgatatgtttataa |
311 |
Q |
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|||||| | ||||||||||||||||| ||||||| |||||||||| |
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| T |
29635448 |
aatgtttgagagaatttatgaaaacaagttatgacatgtttataa |
29635404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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