View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15108_low_15 (Length: 322)
Name: NF15108_low_15
Description: NF15108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15108_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 38667396 - 38667261
Alignment:
| Q |
11 |
cacagatcaattaaaatatgaaggacacgtagatagcatgcaaaggaaaatatttgcatacattaaactatgtacaagataagtgtttgtcgcacttatt |
110 |
Q |
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| T |
38667396 |
cacagatcaattaaaatatgaaggacacgtagatagcatgcaaaggaaaatatttgcatacatcaaactatgtacaagataagtgtttgtcgcacttatt |
38667297 |
T |
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| Q |
111 |
aggcgccaagtggtattggtaaactaatgcaaacca |
146 |
Q |
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| T |
38667296 |
aggcgccaagtggtattggtaaactaatgcaaacca |
38667261 |
T |
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Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 38669989 - 38669798
Alignment:
| Q |
20 |
attaaaatatgaaggacacgtagatagcatgcaaaggaaaatatttgcatacattaaactatgtacaagataagtgtttgtcgcacttattaggcgccaa |
119 |
Q |
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| T |
38669989 |
attaaaatatgaaggacaccaagatatcacggagaggaaaatgtttacgtgcatcaaaatatgtacaagataaatgtttgtggcccttactaggtgccaa |
38669890 |
T |
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| Q |
120 |
gtggtattggtaaactaatg-------caaaccaaaatgaaactagaacaacagttccaagggtcctctctaaagatacaatagcaaaacct |
204 |
Q |
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| T |
38669889 |
gtgatattggtgaactaaactattaaccaaaccaaaataaaactggaacaatagtcccaagggtcctctctgaagatacaatagcaaaacct |
38669798 |
T |
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