View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15108_low_17 (Length: 304)
Name: NF15108_low_17
Description: NF15108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15108_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 42 - 291
Target Start/End: Original strand, 32134458 - 32134709
Alignment:
| Q |
42 |
gaattgttgctcaagagggaagaaacaaagaatcttggttgaacaaatgtataacgtattcttgttggttttctcaatatcatagaggattggacacgac |
141 |
Q |
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| T |
32134458 |
gaattgttgctgaagagggaagaaacaaagaatcttggttgaacaaatgtataacgtattcttgttggttttctcaatatcatagaggattagacacgac |
32134557 |
T |
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| Q |
142 |
acaattcagaccaaagttatgtttttcttaagaaacaaaagttgttca---nnnnnnngaaaggagaagttgttcattgtaaaggatgaagataagctta |
238 |
Q |
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| T |
32134558 |
acaattcagaacaaagttatgtttttcttaagaaacaaaagttgttcattttttttttgaaaggagaagttgttcattgtacaggatgaagataagctta |
32134657 |
T |
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| Q |
239 |
gtgctgctaatattgattggatgcattatatctaagaactgaaccaaaaatct |
291 |
Q |
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| T |
32134658 |
gtggtgctaatattgattggatgca-tatatctaagcactgaaccaaaaatct |
32134709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 32134398 - 32134444
Alignment:
| Q |
1 |
gaaagagagaaattgagaaaagagtgaagaattgtgattttgaattg |
47 |
Q |
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| T |
32134398 |
gaaagagagaaattgagaaaagagtgaagaattgtgattttgaattg |
32134444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 42 - 291
Target Start/End: Complemental strand, 45511666 - 45511417
Alignment:
| Q |
42 |
gaattgttgctcaagagggaagaaacaaagaatcttggttgaacaaatgtataacgtattcttgttggttttctcaatatcatagaggattggacacgac |
141 |
Q |
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| T |
45511666 |
gaattgttgatgaagagggaagaaacaaagaatcctggttgaacaaatgtataacgtattcttgttggttttctcaatatcatagaggattagacacgac |
45511567 |
T |
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| Q |
142 |
acaattcagaccaaagttatgtttttcttaagaaacaaaagttgttca--nnnnnnngaaaggagaagttgttcattgtaaaggatgaagataagcttag |
239 |
Q |
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| T |
45511566 |
acaattcagaccaaagttatgtttttcttaagaaacaaaagttgttcatttttttttgaaaggagaagttgttcattgtacaggatgaagataagcttaa |
45511467 |
T |
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| Q |
240 |
tgctgctaatattgattggatgcattatatctaagaactgaaccaaaaatct |
291 |
Q |
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| T |
45511466 |
tgctgctaatattgatt-gatgca-tatatctaagcagtgaaccaaaaatct |
45511417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 45511726 - 45511680
Alignment:
| Q |
1 |
gaaagagagaaattgagaaaagagtgaagaattgtgattttgaattg |
47 |
Q |
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| T |
45511726 |
gaaagagagaaattgagaaaagagtaaagaattgtgattttgaattg |
45511680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 8176990 - 8177039
Alignment:
| Q |
215 |
ttgtaaaggatgaagataagcttagtgctgctaatattgattggatgcat |
264 |
Q |
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| T |
8176990 |
ttgtacaggatgaagataagcttagtgttgcaaatattgattggatgcat |
8177039 |
T |
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