View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15108_low_20 (Length: 268)
Name: NF15108_low_20
Description: NF15108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15108_low_20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 40945434 - 40945180
Alignment:
| Q |
14 |
agagtgagtacagaaaggaacgaagggttacctgatattcgaatctcaggtgacacttctaaatttcggtatacaaatcgacaaggacaaaggtcagcat |
113 |
Q |
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| T |
40945434 |
agagtgagtacacaaaggaacgaagggttacctgatattcgaatctcagatgacacttctaaatttcggtatacaaatcgacagggacaaaggtcagcat |
40945335 |
T |
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| Q |
114 |
tgaggatatcaagggttgtgacagagacattgaagcttggattgaaagatgtaagatggtttgtgatgggagatgatgatactgtttttgttgttgataa |
213 |
Q |
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| T |
40945334 |
tgaggatatcaagggttgtgacagagacattgaagcttggattgaaagatgtaagatggtttgtgatgggagatgatgatactgtttttgttgttgataa |
40945235 |
T |
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| Q |
214 |
tgttgttagaattctttcaaagtatgaccatagacatttttattatgttggtagt |
268 |
Q |
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| T |
40945234 |
tgttgttagaattctttcaaagtatgaccatagacatttttattatgttggtagt |
40945180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 264
Target Start/End: Complemental strand, 22776793 - 22776570
Alignment:
| Q |
41 |
ttacctgatattcgaatctcaggtgacacttctaaatttcggtatacaaatcgacaaggacaaaggtcagcattgaggatatcaagggttgtgacagaga |
140 |
Q |
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| T |
22776793 |
ttaccagatattcaaatttcgggggacactagtagatttaagtatacgaatcgtcagggacagagatctgctttaaggatttcaaggattgtgacagaga |
22776694 |
T |
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| Q |
141 |
cattgaagcttggattgaaagatgtaagatggtttgtgatgggagatgatgatactgtttttgttgttgataatgttgttagaattctttcaaagtatga |
240 |
Q |
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| T |
22776693 |
cattgaaacttgggttggaggatgtgagatggttcatgatgggagatgatgatactgtgtttatggttgataatgtggttagagttctttcaaaatatga |
22776594 |
T |
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| Q |
241 |
ccatagacatttttattatgttgg |
264 |
Q |
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| T |
22776593 |
tcatactcaattttattatgttgg |
22776570 |
T |
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