View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15108_low_21 (Length: 265)
Name: NF15108_low_21
Description: NF15108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15108_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 48699739 - 48699488
Alignment:
| Q |
15 |
agggttgtgagtgaggacgcaagacagtgacaaatccatgacagttaatttcaannnnnnnatagaagttaaattcatttgcagttcatggaagtaaccc |
114 |
Q |
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| T |
48699739 |
agggttgtgagtgaggacgcaagacagtgacaaatccacgacagttagtttcaatttttttatagaagttaaattcatttgcagttcatggaagtaaccc |
48699640 |
T |
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| Q |
115 |
cataacattgacttcataataaaaagcaaccagtcta-----agtgtactttgttcaatggactt--gtgacagatcactgtctttagtggtgtgctaat |
207 |
Q |
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| T |
48699639 |
cataacattgacttcataacaaaaagcaaccagtctagtctaagtgtactttgttcaacggacttttgtgacagatcactgcctttagtggtgtgctaat |
48699540 |
T |
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| Q |
208 |
agtaagttctaactgggaaagtggaaatcaatccaaattaatatattccttt |
259 |
Q |
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| T |
48699539 |
agtaagttctaactgggaaagtggaaatcaatccaaattagtatattccttt |
48699488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 48686825 - 48686761
Alignment:
| Q |
173 |
ttgtgacagatcactgtctttagtggtgtgctaatagtaagttctaactgggaaagtggaaatca |
237 |
Q |
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| T |
48686825 |
ttgtgacaaatcactgcctttagtggtgtgctaatagtaatttctaactgggaaagttgaaatca |
48686761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 48691071 - 48691011
Alignment:
| Q |
186 |
ctgtctttagtggtgtgctaatagtaagttctaactgggaaagtggaaatcaatccaaatt |
246 |
Q |
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| T |
48691071 |
ctgtctttagtggtgtgcttatagtaatttctaactgggaaagtggaagtcaattcaaatt |
48691011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 255
Target Start/End: Complemental strand, 48696542 - 48696451
Alignment:
| Q |
165 |
caatggacttgtgacagatcactgtctttagtggtgtgctaatagtaagttctaactggg-aaagtggaaatcaatccaaattaatatattc |
255 |
Q |
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| T |
48696542 |
caatggatttgcgacaaatcactgcctttagtggtgtcctaatagtaatttctaacagggaaaagtctaaatcaatcgaaattaacatattc |
48696451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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