View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15108_low_22 (Length: 264)
Name: NF15108_low_22
Description: NF15108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15108_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 30860355 - 30860595
Alignment:
| Q |
18 |
gtttcaactttcccaaatgaacatgatagtatatactattcatagcaagattttgagttagaaaagaagcaccaacaattccaaattcctttgcaacatc |
117 |
Q |
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| T |
30860355 |
gtttcaactttcccaaatgaacatgatagtatatactattcatagcaagattttgagttagaaaagaagcaccaacaattccaaatttctttgcaacatc |
30860454 |
T |
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| Q |
118 |
taagcaccaaggcatgaatgaatcataaataagacaatcaacatggtcgtttctagcattaaggttgttaataagatgagcaagagattgtggaccaact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30860455 |
taagcaccaaggcatgaatgaatcataaataagacaatcaacatggtcgtttctagcattaaggttgttaataagatgagcaagagattgtggaccaact |
30860554 |
T |
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| Q |
218 |
tgccaaaatttattcaaataaattataaaatcctttgcttc |
258 |
Q |
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| T |
30860555 |
tgccaaaatttattcaaataaattataaaatcctttgcttc |
30860595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 30818346 - 30818586
Alignment:
| Q |
18 |
gtttcaactttcccaaatgaacatgatagtatatactattcatagcaagattttgagttagaaaagaagcaccaacaattccaaattcctttgcaacatc |
117 |
Q |
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| T |
30818346 |
gtttcaactttcccaaatgaacatgatagtatatactattcataacaagattttgtgttagaaaagaagcaccaacaattccaaattcctttgcaacatc |
30818445 |
T |
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| Q |
118 |
taagcaccaaggcatgaatgaatcataaataagacaatcaacatggtcgtttctagcattaaggttgttaataagatgagcaagagattgtggaccaact |
217 |
Q |
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| T |
30818446 |
taagcaccaaggcatgaatgaatcataaataagacaatcaacatggtcgtttctagcattaaggttgttaataagatgagcaagagattgtggaccaact |
30818545 |
T |
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| Q |
218 |
tgccaaaatttattcaaataaattataaaatcctttgcttc |
258 |
Q |
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| T |
30818546 |
tgccaaaatttattcaaatacaatttaaaatcctttgcttc |
30818586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 30841448 - 30841573
Alignment:
| Q |
34 |
atgaacatgatagtatatactattcatagcaagattttgagttagaaaagaagcaccaacaattccaaattcctttgcaacatcta-agcaccaaggcat |
132 |
Q |
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| T |
30841448 |
atgaacatgatagtaaatactattcactgacatattttgagtgagataagtaacaccaacaattccaaatctcttagcaacatcaagagc-ccaaggaaa |
30841546 |
T |
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| Q |
133 |
gaatgaatcataaataagacaatcaac |
159 |
Q |
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| T |
30841547 |
aaatgaatcataaataacacaatcaac |
30841573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 159
Target Start/End: Original strand, 30847840 - 30847964
Alignment:
| Q |
35 |
tgaacatgatagtatatactattcatagcaagattttgagttagaaaagaagcaccaacaattccaaattcctttgcaacatcta-agcaccaaggcatg |
133 |
Q |
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|||||||||||||| |||||||||| | ||||||||| ||| ||||| ||||||||||||||||| ||| |||||||| | ||| |||||| | |
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| T |
30847840 |
tgaacatgatagtaaatactattcaccaacatattttgagtgagataagaaacaccaacaattccaaatctcttagcaacatcaagagc-ccaaggaaaa |
30847938 |
T |
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| Q |
134 |
aatgaatcataaataagacaatcaac |
159 |
Q |
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| T |
30847939 |
aatgaattataaataacacaatcaac |
30847964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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