View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15108_low_3 (Length: 413)
Name: NF15108_low_3
Description: NF15108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15108_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 16 - 399
Target Start/End: Complemental strand, 28616772 - 28616389
Alignment:
| Q |
16 |
gtttgtatactgaaagtagtgaaataatgattatataggtgttacattcgtatattagtatttttgcggtaaaaatctaatcgtttnnnnnnngaggaac |
115 |
Q |
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| T |
28616772 |
gtttgtatactgaaagtagtgaaataatgattatataggtgttacattcgtatattagtatttttgcggtaaaaatctaatcgtttaaaaaaagaggaac |
28616673 |
T |
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| Q |
116 |
gggcgtgtgaaaggtatatagttgtttaagaacctcgtagaagcttggcctaaaactttactatcgtgtttcttttgcagcatatggttattggtggtct |
215 |
Q |
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| T |
28616672 |
gggcgtgtgaaaggtatatagttgtttaagaacctcgtagaagcttggcctaaaactttactatcgtgtttcttttgcagcatatgattattggtggtct |
28616573 |
T |
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| Q |
216 |
cccccttgtggcattagcgattcttaacaacgaacctgttgtaagtgggagtcttaaagagtacagttcaactgatgtattggtactcctctacatgtcc |
315 |
Q |
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| T |
28616572 |
cccccttctggcattagcgattcttaacaacgaacctgttgtaagtgggagtcttaaagagtacagttcaactgatgtattggcactcctctacatgtcc |
28616473 |
T |
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| Q |
316 |
attttcggaagtgctgttagctatggtgtgttctttcacagtgcaactaaaggtctgtatatctttttgattacaatctctctc |
399 |
Q |
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| T |
28616472 |
attttcggaagtgctgttagctatggtgtgttctttcacagtgcaactaaaggtctgtatatctttttgattacaatctctctc |
28616389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 123 - 386
Target Start/End: Complemental strand, 28620662 - 28620399
Alignment:
| Q |
123 |
tgaaaggtatatagttgtttaagaac-ctcgtagaagcttggcctaaaactttactatcgtgtttcttttgcagcatatggttattggtggtctccccct |
221 |
Q |
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| T |
28620662 |
tgaaaggtatctcgttgtttaggaactctc-tggaagcttggttcaaaactttactatccttttccttttgcagcatatggttattggtggtctccccct |
28620564 |
T |
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| Q |
222 |
tgtggcattagcgattcttaacaacgaacctgttgtaagtgggagtcttaaagagtacagttcaactgatgtattggtactcctctacatgtccattttc |
321 |
Q |
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||||||||| |||||||||||||| || |||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| |
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| T |
28620563 |
tgtggcattcgcgattcttaacaatgaccctgctgtaagtgggagtcttaaagagtacagttcaacggatgtattggcactcctctacacatccattttt |
28620464 |
T |
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| Q |
322 |
ggaagtgctgttagctatggtgtgttctttcacagtgcaactaaaggtctgtatatctttttgat |
386 |
Q |
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| T |
28620463 |
ggaagtgctgttagctatggtgtgttcttttacagtgcaactaaaggtatgtatatctttctgat |
28620399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 28620771 - 28620710
Alignment:
| Q |
15 |
agtttgtatactgaaagtagtgaaataatgattatataggtgttacattcgtatattagtatt |
77 |
Q |
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| T |
28620771 |
agtttgtgtactgaga-tagtgaaatgatgattatataggtgttacatttatatattagtatt |
28620710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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