View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15108_low_4 (Length: 409)
Name: NF15108_low_4
Description: NF15108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15108_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 20 - 406
Target Start/End: Complemental strand, 43309730 - 43309339
Alignment:
| Q |
20 |
tccaatgagcatgtatattatccaacatgttatgtatgaaaccatctctacctaaaacaccaaaattgaattaatgca-----------atcacatatgt |
108 |
Q |
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| T |
43309730 |
tccaatgagcatgtatattatccaacatgttatgtatgaaaccatctctacctaaaacaccaaaattgaattaatgcatcataagtgctatcacatatgt |
43309631 |
T |
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| Q |
109 |
actctcgtatataagctatt-tatttctatgacaaaagataagataagataaaataaagtcaaataaattaatctaaacatacccaaattgagttggcga |
207 |
Q |
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| T |
43309630 |
actc--gtatataagctatgctatttctatgacaaaagataagataa-----aataaagtcaaataaattaatctaaacatacccaaattgagttggcga |
43309538 |
T |
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| Q |
208 |
ctagatttcaaggtacttcgaaccaactcattaatctcctccttcgtcaacggttcacccaacacttcttctctagacatcacatacctcgggctagtcc |
307 |
Q |
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| T |
43309537 |
ctagatttcaaggtacttcgaaccaactcattaatctcctccttcgtcaacggttcacccaacacttcttctctagacatcacatacctcgggctagtcc |
43309438 |
T |
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| Q |
308 |
cgggcaaaaacggaccgggagactgaaccggtttaacacccttcttatgtggcgggggaagaacaaaagaatcaaactccttgagcttcatctcactcg |
406 |
Q |
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| T |
43309437 |
cgggcaaaaacggaccgggagactgaaccggtttaacacccttcttatgtggcgggggaagaacaaaagaatcaaactccttgagcttcttcttactcg |
43309339 |
T |
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