View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15108_low_5 (Length: 402)
Name: NF15108_low_5
Description: NF15108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15108_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 13 - 386
Target Start/End: Complemental strand, 45403940 - 45403567
Alignment:
| Q |
13 |
aagaatatagtattagaatctgataattatgagatgctaagggaggctgaacctgttaaaaggtactccaagcagagatcttggagaccagcattggaga |
112 |
Q |
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| T |
45403940 |
aagaaaatagtattagaatctgataattatgagatgctaagggaggctgaacctgttaaaaggtactccaagcagagatcttggagaccagcattggaga |
45403841 |
T |
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| Q |
113 |
ccattgatgaaactccatcaaggcaataaatgaaactccctttccttttctttttccctcaatttgcttcatctgtgtttggtagaaattcttgtatttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45403840 |
ccattgatgaaactccatcaaggcaataaatgaaactccctttccttttctttttccctcaatttgcttcatctgtatttggtagaaattcttgtatttt |
45403741 |
T |
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| Q |
213 |
ttgtaagattaagttagagttagtccatatgattttttacgccactcgcgttcgcgtaaccaaaatatctgagccgtacttgagatgtaaatcctccttg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45403740 |
ttgtaagattaagttagagttagtccatatgattttttacgccactcgcgttcgcgtaaccaaaatatctgagccgtacttgagatgtaaatcctccttg |
45403641 |
T |
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| Q |
313 |
tagtctctccatagtttgtttagttatggaacaattattggaattttcactcaagaaatgtgtgatactaatgt |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45403640 |
tagtctctccatagtttgtttagttatggaacaattattggaattttcactcaagaaatgtgtgatactaatgt |
45403567 |
T |
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