View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15108_low_6 (Length: 398)
Name: NF15108_low_6
Description: NF15108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15108_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 64 - 386
Target Start/End: Complemental strand, 42911620 - 42911298
Alignment:
| Q |
64 |
gtatataacactaatatttgaggaagagagtaattcgatgttgctaacttttgaccaaaaccaatttgcttcagtttgcaacattaacaagtgcctagag |
163 |
Q |
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| T |
42911620 |
gtatataacactaatatttgaggaagagagtaattcgatgttgctaacttttgaccaaaaccaatttgcttcagtttgcaacattaacaagtgcctagag |
42911521 |
T |
|
| Q |
164 |
tccattaactataatctaatagtcacatggaaatttagactttatagagctttcatgtcattgtcgtagtggtaacatggaaggagtgnnnnnnnngttt |
263 |
Q |
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| T |
42911520 |
tccattaactataatctaatagtcacatggaaatttagactttatagagctttcatgtcattgtcgtagtggtaacatggaaggagtgttttttttgttt |
42911421 |
T |
|
| Q |
264 |
taatttgtgatcttgttgtttaaagactattataccacttgatggcttattaaacattacttgtgcttattgcttactagcatatactaccatgaaagtt |
363 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42911420 |
taatttgtgatcatgttgtttaaagactattataccacttgatggcttattaaacattacttgtgcttattgcttactagcatatactaccatgaaagtt |
42911321 |
T |
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| Q |
364 |
caataattatgaccaaaatattg |
386 |
Q |
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||||||||||||||||||||||| |
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| T |
42911320 |
caataattatgaccaaaatattg |
42911298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 42912095 - 42912033
Alignment:
| Q |
1 |
tggaacaaatcgcgagaaaaacgaaacacaaaacagcggctacaacaaaaaagatcctcggag |
63 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42912095 |
tggaacaaatcgcgagaaaaacgaaacacaaaacagcggctataacaaaaaagatcctcggag |
42912033 |
T |
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