View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15108_low_7 (Length: 393)
Name: NF15108_low_7
Description: NF15108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15108_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 36243053 - 36242675
Alignment:
| Q |
1 |
tatgccgtctaggctaattaagttagtgtctacacatgcgtttacttggttaaaattaagcggtagttagacttttgcaaaaggggtcaaagatagtgcc |
100 |
Q |
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| T |
36243053 |
tatgccgtctaggttaattaagttagtgtctacatatgcgtttacttggttaaaattaagcgggagtaagacttttgcaaaaggggtcaaagatagtgcc |
36242954 |
T |
|
| Q |
101 |
aaatatgctattttaaaagttgagcagtcgaaatcgttagtttgtgaaagttggaacccaaaaatgcaatttagccaataataaaatccatggattaaag |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36242953 |
aaatatgctattttaaatgttgagcagtcgaaatcgttagtttgtgaaagttggaacccaaaaatgcaatttagtcaataataaaatccatggattaaag |
36242854 |
T |
|
| Q |
201 |
accgtgcgacacgtagagatcaaaatcagctaatgctatgaatgtatagaagcaatactcaaatnnnnnnncgtacagctataaatatgacatttcaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
36242853 |
accgtgcgacacgtagagatcaaaatcagctaatgctatgaatgtatagaagcaatactcaaataaaaaaacgtacagctataaatatgacatttcaaat |
36242754 |
T |
|
| Q |
301 |
tgttagtaataaatactccaatacccttcagctttcactatgttatgtactatgtgaaatgtctctatcagtgatacct |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36242753 |
tgttagtaataaatactccaatacccttcagctttcactatgtaatgtactatgtgaaatgtctctatcagtgatacct |
36242675 |
T |
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