View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15109_low_12 (Length: 263)
Name: NF15109_low_12
Description: NF15109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15109_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 27527504 - 27527745
Alignment:
| Q |
6 |
agcagcacagagaacagagatctcatgagctttcttgagaagtccagctctccttttagagaaagtaacctgacgattgatcttgttttctatcctcttc |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27527504 |
agcatcacaaagaacagagatctcatgagctttcttgagaagtccagctctccttttagagaaagtaacctgacgattgatcttgttttctatcctcttc |
27527603 |
T |
|
| Q |
106 |
aactgaaccctacctcttcccatgttaagtgatgtttgttttaggaaattgttttttctttaattatattattatacctaaattacttcttctagctata |
205 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27527604 |
aactgaaccctaccccttcccatgttaagtgatgtttgttttaggaaattgttttttctttaattatattattatacctaaattacttcttctagctata |
27527703 |
T |
|
| Q |
206 |
tcnnnnnnncccaagaaaaacccaaacaagtaaaagggaaca |
247 |
Q |
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| T |
27527704 |
tctttttttcccaagaaaaacccaaacaagtaaaagggaaca |
27527745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 12811969 - 12812091
Alignment:
| Q |
6 |
agcagcacagagaacagagatctcatgagctttcttgagaagtccagctctccttttagagaaagtaacctgacgattgatcttgttttctatcctcttc |
105 |
Q |
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|||| ||||||||||||| | |||| |||||||||||| | ||| ||| ||||| |||||||| ||||| || || || ||||| ||||| |||||| |
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| T |
12811969 |
agcatcacagagaacagacagttcataagctttcttgagcaaaccatttcttctttttgagaaagttacctgccggtttattttgttctctattctcttc |
12812068 |
T |
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| Q |
106 |
aactgaaccctacctcttcccat |
128 |
Q |
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|| | ||| || ||||||||||| |
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| T |
12812069 |
aattcaactcttcctcttcccat |
12812091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 20514727 - 20514821
Alignment:
| Q |
6 |
agcagcacagagaacagagatctcatgagctttcttgagaagtccagctctccttttagagaaagtaacctgacgattgatcttgttttctatcc |
100 |
Q |
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| T |
20514727 |
agcatcacaaagaacagatatttctttagctttcttgagcaaaccggttttcctttttgagaaagtaacctgtcgattgatcttgttttcgatcc |
20514821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 128
Target Start/End: Complemental strand, 25524916 - 25524794
Alignment:
| Q |
6 |
agcagcacagagaacagagatctcatgagctttcttgagaagtccagctctccttttagagaaagtaacctgacgattgatcttgttttctatcctcttc |
105 |
Q |
| |
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|||| |||| || |||||||||||||||||||||||||| | |||| ||| || || || ||||| || || | |||||||||||| || ||| ||||| |
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| T |
25524916 |
agcatcacaaagcacagagatctcatgagctttcttgagtaaaccagatcttctctttgaaaaagttacttgcctattgatcttgttctcaatcttcttc |
25524817 |
T |
|
| Q |
106 |
aactgaaccctacctcttcccat |
128 |
Q |
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| T |
25524816 |
aattgcacccttcctctccccat |
25524794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Complemental strand, 28470229 - 28470159
Alignment:
| Q |
58 |
cttttagagaaagtaacctgacgattgatcttgttttctatcctcttcaactgaaccctacctcttcccat |
128 |
Q |
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||||| ||||||||||| || || ||||| ||||||||||||||||||| | |||||| ||||| ||||| |
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| T |
28470229 |
ctttttgagaaagtaacttgccggttgattttgttttctatcctcttcagttcaaccctccctctacccat |
28470159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 5251578 - 5251521
Alignment:
| Q |
5 |
gagcagcacagagaacagagatctcatgagctttcttgagaagtccagctctcctttt |
62 |
Q |
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||||| |||| |||||||| || |||| |||||||||||||||||||| ||| ||||| |
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| T |
5251578 |
gagcatcacaaagaacagaaatttcattagctttcttgagaagtccagttcttctttt |
5251521 |
T |
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