View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15109_low_15 (Length: 238)

Name: NF15109_low_15
Description: NF15109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15109_low_15
NF15109_low_15
[»] chr4 (6 HSPs)
chr4 (18-209)||(26646557-26646748)
chr4 (29-134)||(13683405-13683511)
chr4 (29-134)||(22187941-22188047)
chr4 (45-134)||(26646341-26646430)
chr4 (65-134)||(33078057-33078126)
chr4 (29-95)||(13689732-13689799)
[»] chr8 (2 HSPs)
chr8 (18-134)||(36991734-36991851)
chr8 (35-107)||(36996909-36996982)
[»] chr7 (1 HSPs)
chr7 (29-95)||(8596620-8596688)


Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 26646748 - 26646557
Alignment:
Q  18 aagtattggtgtgattgtttaatttaaaaaattagttaatagtaaaagtgtgatacaatagtgttgctaggcttttggcttgatatccagtagaccgtgc 117  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26646748 aagtattcgtgtgattgtttaatttaaaaaattagttaatagtaaaagtgtgatacaatagtgttgttaggcttttggcttgatatccagtagaccgtgc 26646649  T
Q  118 aggctgatcatattctannnnnnnnnnnnnnnnnnnnngaagaaaaatggagaagaactttactcaaagtgacgagctcaatcaatcgaact 209  Q
    |||||||||||||||||                     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26646648 aggctgatcatattctaattatttatttatttatttttgaagaaaaatggagaagaactttactcaaagtgacgagctcaatcaatcgaact 26646557  T

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Target: chr4; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 13683405 - 13683511
Alignment:
Q  29 tgattgtttaatttaaaaaattagttaatagtaaaa-gtgtgatacaatagtgttgctaggcttttggcttgatatccagtagaccgtgcaggctgatca 127  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  13683405 tgattgtttaatttaaaaaattagttaataataaaaagtgtgatacaatagtgttgctaggcttttggcttgatacccagtagactgtgcaggctgatca 13683504  T
Q  128 tattcta 134  Q
    |||||||    
T  13683505 tattcta 13683511  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 134
Target Start/End: Complemental strand, 22188047 - 22187941
Alignment:
Q  29 tgattgtttaatttaaaaaattagttaatagtaaaa-gtgtgatacaatagtgttgctaggcttttggcttgatatccagtagaccgtgcaggctgatca 127  Q
    |||||||| ||||| ||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22188047 tgattgttcaattttaaaaactagttaataataaaaagtgtgatacaatagtgttgctaggcttttggcttgatatccagtagactgtgcaggctgatca 22187948  T
Q  128 tattcta 134  Q
    |||||||    
T  22187947 tattcta 22187941  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 26646430 - 26646341
Alignment:
Q  45 aaaattagttaatagtaaaagtgtgatacaatagtgttgctaggcttttggcttgatatccagtagaccgtgcaggctgatcatattcta 134  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||    
T  26646430 aaaattagttaataataaaagtgtgatacattagtgttgctaggcttttggcttgatatacagtagactgttcaggctgatcatattcta 26646341  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 33078057 - 33078126
Alignment:
Q  65 gtgtgatacaatagtgttgctaggcttttggcttgatatccagtagaccgtgcaggctgatcatattcta 134  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||    
T  33078057 gtgtgatgcaatagtgttgctaggcttttggcttgttatctagtagactgtgcaggctgatcatattcta 33078126  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 13689732 - 13689799
Alignment:
Q  29 tgattgtttaatttaaaaaattagttaatagtaaaa-gtgtgatacaatagtgttgctaggcttttgg 95  Q
    |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  13689732 tgattgcttaatttaaaaaattagttaataataaaaagtgtgatacaatagtgttgctaggcttttgg 13689799  T

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Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 36991851 - 36991734
Alignment:
Q  18 aagtattggtgtgattgtttaatttaaaaaattagttaatagtaaaa-gtgtgatacaatagtgttgctaggcttttggcttgatatccagtagaccgtg 116  Q
    ||||||| ||||||||||||||||| |  ||||| |||||| ||||| ||||||| ||| |||||||||||||||||||||||||||||||||||| |||    
T  36991851 aagtattcgtgtgattgtttaattttatgaattacttaataataaaaagtgtgatgcaacagtgttgctaggcttttggcttgatatccagtagactgtg 36991752  T
Q  117 caggctgatcatattcta 134  Q
    ||||||||||||||||||    
T  36991751 caggctgatcatattcta 36991734  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 36996982 - 36996909
Alignment:
Q  35 tttaatttaaaaaattagttaatagtaaaa-gtgtgatacaatagtgttgctaggcttttggcttgatatccag 107  Q
    |||||||| |||| |||||||||| ||||| ||||||||||||||||| | ||||||||| |||||||||||||    
T  36996982 tttaatttcaaaatttagttaataataaaaagtgtgatacaatagtgtcggtaggctttttgcttgatatccag 36996909  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 8596688 - 8596620
Alignment:
Q  29 tgattgtttaa-tttaaaaaattagttaatagtaaaa-gtgtgatacaatagtgttgctaggcttttgg 95  Q
    ||||||||||| ||| ||||||||||| ||| ||||| ||||||||||| |||||||||||||||||||    
T  8596688 tgattgtttaaattttaaaaattagtttataataaaaagtgtgatacaacagtgttgctaggcttttgg 8596620  T

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