View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15109_low_16 (Length: 226)
Name: NF15109_low_16
Description: NF15109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15109_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 39920785 - 39920967
Alignment:
| Q |
23 |
ctacaaattttaggagtaacatagttagatttttaaaatttaaagtgaagtaaaaatataggaacttgagatcacttgtaaaactccaagatgtaattcc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39920785 |
ctacaaattttaggagtaacatagttagatttttaaaatttaaagtgaagaaaaaatataggaacttgagatcacttgtaaaactccaagatgtaattcc |
39920884 |
T |
|
| Q |
123 |
taattgaaactgtatgttggaaattttagaatttaggagttaagttgaaaatggatttcaggggaagcaaaggttggattcat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39920885 |
taattgaaactgtatgttggaaattttagaatttaggagttaagttgaaaatggatttcaggggaagcaaaggttggattcat |
39920967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 33 - 205
Target Start/End: Original strand, 39909476 - 39909648
Alignment:
| Q |
33 |
taggagtaacatagttagatttttaaaatttaaagtgaagtaaaaatataggaacttgagatcacttgtaaaactccaagatgtaattcctaattgaaac |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
39909476 |
taggagtaacatagttagatttttaaaatttaaagtgaagtaaaaatataggaacttgagatcacttgcgaaactccaagatgtaattcctaattataac |
39909575 |
T |
|
| Q |
133 |
tgtatgttggaaattttagaatttaggagttaagttgaaaatggatttcaggggaagcaaaggttggattcat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39909576 |
tgtatgttggaaattttagaatttaggagttaagttgaaaatggatttcaggggaagcaaaggttggattcat |
39909648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 27 - 205
Target Start/End: Original strand, 39882099 - 39882279
Alignment:
| Q |
27 |
aaattttaggagtaacatagttagatttttaaaatttaaagtgaagtaaaaatataggaacttgagatcacttgtaaaactccaagatgtaattcctaa- |
125 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
39882099 |
aaatcttaggagtaacatagttatatttttaaaatttacagtgaagtaaaaatataggaacttgagatcacttgtgaaactccaagatgtaattcctaat |
39882198 |
T |
|
| Q |
126 |
-ttgaaactgtatgttggaaattttagaatttaggagttaagttgaaaatggatttcaggggaagcaaaggttggattcat |
205 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39882199 |
tttataactgtatgttggaaattttagaatttaggagttaagttgaaaatggatttcaggggaagcaaaggttggaatcat |
39882279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 39813138 - 39813188
Alignment:
| Q |
152 |
aatttaggagttaagttgaaaatggatttcaggggaagcaaaggttggatt |
202 |
Q |
| |
|
|||||| |||| || |||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
39813138 |
aatttatgagtgaacttgaaaatggatttcaggagaagcaaaggtgggatt |
39813188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University