View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15109_low_3 (Length: 480)
Name: NF15109_low_3
Description: NF15109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15109_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 6711162 - 6711454
Alignment:
| Q |
1 |
tttaatgtagatgataagaaatataatgtcacgtgattcaatggctaaatttgattaatttcgtaatctcttgtnnnnnnntaatgactaattttgtaat |
100 |
Q |
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| T |
6711162 |
tttaatgtagatgataagaaatataatgtcacgtgattcaatggctaaatttgattaatttcgtaatctcttgtaaaaaaataatgactaattttgtaat |
6711261 |
T |
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| Q |
101 |
cttaaatgttactactataagtgatgtaaaacaaaattaagacagaatgaagtggtgtaaatataaagttttgcaacaggtgtaattgtatcatatcatg |
200 |
Q |
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| T |
6711262 |
cttaaatgttactactataagtgatgtaaaacaaaattaagacagaatgaagtggtgtaaatataaagttttgcaacaggtgtaattgtatcatatcatg |
6711361 |
T |
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| Q |
201 |
aaggataatgaaattgaaaacattttattcatgatgcaggattcttttgttttgtgacacacataaattttcactctatttacaatttaatct |
293 |
Q |
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| T |
6711362 |
aaggataatgaaattgaaaacattttattcatgatgtaggattcttttgttttgtgacacacataaattttcactctatttacaatttaatct |
6711454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 373 - 466
Target Start/End: Original strand, 6711525 - 6711618
Alignment:
| Q |
373 |
ctaaatttggcacactgtaattcgaaagatttgggaggctcgtaatgaaatgatttttcttcaaagactctggtgcttgaagagatggtagatg |
466 |
Q |
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| T |
6711525 |
ctaaatttggcacagtgtaattcgaaagatttgggtggctcgtaatgaaatgatttttcttcaaagactctggtgcttgaagagattgtagatg |
6711618 |
T |
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