View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15109_low_4 (Length: 440)

Name: NF15109_low_4

Description: NF15109

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15109_low_4

[»] chr7 (1 HSPs)

Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 348; E-Value: 0

Query Start/End: Original strand, 36 - 440

Target Start/End: Original strand, 45702846 - 45703251

Alignment:

Q	36	caagtcagttcatctccaatgaatgaatttcctcgttaatggccttcaaactattttagactctcattgctctcaaatgcttttttgaaggcctttgttt	135	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	45702846	caagttagttcatctccaatgaatgaatttcctcattcatggcctt-aaactatttcagactctcattgctctcaaatgctttcttgaaggcctttgttt	45702944	T

Q	136	ctaagtttttcaacctttcatctgcatttagagcataaaaaatatgaacaacaaagcgatatcttattggtggaacaatatccctatattcctcatctct	235	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	45702945	ctaagtttttcaacctttcatccgcatttagagcataaaaaatatggacaacaaagccatatcttattggtggaacaatatccctatattcctcatctct	45703044	T

Q	236	atccaattgatggtcaaaatccgttgttgtttgtcttcctctag--tatttgatggaggagtctcaccctcttctttgtctcttgtctcactagtggaag	333	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	45703045	atccaattgatggtcaaaatccgttgttgtttgtcttcctctagtatatttgatggaggagtctcaccctcttctttgtctcttgtctcactagtggaag	45703144	T

Q	334	gctccaactcaaactatgttttcttctactttgtttctgagtgaatattcaataggtccttgcacttcatccacatattggtctcatcaaaaataatatt	433	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	45703145	gctccaactcaaactaagttttcttctactttgtttctgagtgaatattcagtaggtccttgcacttcatccacatattggtctcatcaaaaataatatt	45703244	T

Q	434	tatgctt	440	Q
		\|\|\|\|\|\|\|
T	45703245	tatgctt	45703251	T

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