View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15109_low_5 (Length: 439)

Name: NF15109_low_5
Description: NF15109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15109_low_5
NF15109_low_5
[»] chr4 (20 HSPs)
chr4 (18-429)||(5162604-5163015)
chr4 (18-427)||(5184436-5184838)
chr4 (230-327)||(55264632-55264729)
chr4 (256-394)||(53924395-53924530)
chr4 (230-325)||(55264380-55264474)
chr4 (264-321)||(44137405-44137462)
chr4 (268-388)||(54458706-54458826)
chr4 (230-325)||(13302119-13302213)
chr4 (280-395)||(49448188-49448303)
chr4 (230-325)||(55284053-55284148)
chr4 (264-327)||(33614384-33614447)
chr4 (344-395)||(45921830-45921881)
chr4 (247-361)||(54090992-54091106)
chr4 (266-327)||(13119381-13119442)
chr4 (248-327)||(13119191-13119270)
chr4 (248-327)||(39051328-39051406)
chr4 (268-327)||(40942675-40942734)
chr4 (267-325)||(7402978-7403036)
chr4 (248-325)||(13432756-13432832)
chr4 (230-310)||(3465369-3465449)
[»] chr2 (14 HSPs)
chr2 (247-394)||(6511016-6511163)
chr2 (252-327)||(22191386-22191461)
chr2 (246-327)||(17658774-17658855)
chr2 (246-306)||(17672942-17673002)
chr2 (251-314)||(22191527-22191590)
chr2 (288-395)||(32502875-32502982)
chr2 (264-321)||(32013984-32014041)
chr2 (246-306)||(17627870-17627930)
chr2 (264-327)||(33940037-33940100)
chr2 (280-327)||(39760175-39760222)
chr2 (236-306)||(17184764-17184834)
chr2 (230-299)||(35736709-35736778)
chr2 (256-304)||(2451166-2451214)
chr2 (256-388)||(32502985-32503117)
[»] chr5 (13 HSPs)
chr5 (248-325)||(36184738-36184815)
chr5 (249-327)||(31065847-31065925)
chr5 (246-325)||(11275790-11275869)
chr5 (248-327)||(33391514-33391593)
chr5 (233-314)||(20399019-20399100)
chr5 (249-327)||(31050968-31051046)
chr5 (256-301)||(987328-987373)
chr5 (264-325)||(8840022-8840083)
chr5 (236-325)||(31046143-31046231)
chr5 (264-327)||(8285238-8285301)
chr5 (256-299)||(36184524-36184567)
chr5 (265-310)||(27354306-27354351)
chr5 (248-321)||(31066088-31066161)
[»] chr6 (18 HSPs)
chr6 (248-311)||(9530547-9530610)
chr6 (248-330)||(19121854-19121936)
chr6 (248-327)||(21969143-21969222)
chr6 (280-389)||(3889971-3890080)
chr6 (250-327)||(19121985-19122062)
chr6 (248-317)||(21394254-21394323)
chr6 (230-302)||(3889883-3889955)
chr6 (248-300)||(30747944-30747996)
chr6 (248-327)||(3960852-3960931)
chr6 (250-325)||(8446945-8447020)
chr6 (250-325)||(8455749-8455824)
chr6 (265-323)||(17333311-17333368)
chr6 (281-327)||(17437558-17437604)
chr6 (345-395)||(17437695-17437745)
chr6 (344-386)||(23765853-23765895)
chr6 (250-295)||(21969306-21969351)
chr6 (268-305)||(24794190-24794227)
chr6 (285-377)||(15965646-15965738)
[»] chr3 (18 HSPs)
chr3 (248-327)||(55447182-55447261)
chr3 (248-327)||(39840659-39840738)
chr3 (230-327)||(38181332-38181429)
chr3 (247-377)||(33075219-33075349)
chr3 (247-304)||(27812204-27812261)
chr3 (248-325)||(20124246-20124322)
chr3 (264-395)||(29504832-29504963)
chr3 (256-327)||(45965804-45965875)
chr3 (264-327)||(46164085-46164148)
chr3 (249-327)||(40472831-40472909)
chr3 (249-311)||(40860967-40861029)
chr3 (264-321)||(31300371-31300428)
chr3 (250-327)||(39840892-39840969)
chr3 (248-325)||(42045771-42045848)
chr3 (264-320)||(1431476-1431532)
chr3 (264-304)||(3910247-3910287)
chr3 (266-306)||(48338573-48338613)
chr3 (248-304)||(49782221-49782277)
[»] chr1 (21 HSPs)
chr1 (248-321)||(28504711-28504784)
chr1 (230-324)||(46410826-46410920)
chr1 (247-327)||(10595501-10595581)
chr1 (248-395)||(6219625-6219772)
chr1 (256-327)||(7790411-7790481)
chr1 (248-299)||(8792967-8793018)
chr1 (230-305)||(10377568-10377643)
chr1 (230-311)||(6219766-6219847)
chr1 (251-304)||(27293283-27293336)
chr1 (250-327)||(27562671-27562748)
chr1 (250-322)||(38576576-38576648)
chr1 (233-327)||(23399510-23399607)
chr1 (264-314)||(15395209-15395259)
chr1 (250-327)||(38783894-38783971)
chr1 (279-327)||(34835619-34835667)
chr1 (233-299)||(40650039-40650104)
chr1 (266-327)||(4066923-4066984)
chr1 (236-313)||(27293426-27293503)
chr1 (268-305)||(34835740-34835777)
chr1 (344-388)||(27293350-27293394)
chr1 (285-325)||(46410682-46410722)
[»] scaffold0022 (1 HSPs)
scaffold0022 (264-321)||(122547-122604)
[»] chr8 (11 HSPs)
chr8 (230-327)||(10028633-10028730)
chr8 (246-327)||(10028741-10028822)
chr8 (250-394)||(33229497-33229635)
chr8 (248-325)||(21136587-21136664)
chr8 (248-325)||(10028876-10028953)
chr8 (245-326)||(23961644-23961725)
chr8 (252-304)||(41687849-41687901)
chr8 (247-306)||(5840352-5840411)
chr8 (264-314)||(23768775-23768825)
chr8 (347-388)||(10028813-10028854)
chr8 (347-395)||(5846951-5846999)
[»] chr7 (14 HSPs)
chr7 (250-304)||(36478557-36478611)
chr7 (266-325)||(21248998-21249057)
chr7 (256-327)||(41008922-41008993)
chr7 (248-327)||(42709917-42709996)
chr7 (250-394)||(10524976-10525114)
chr7 (250-395)||(30935271-30935416)
chr7 (267-327)||(6026-6086)
chr7 (233-320)||(3248445-3248532)
chr7 (264-327)||(3248336-3248399)
chr7 (258-325)||(26752017-26752084)
chr7 (285-375)||(12427916-12428006)
chr7 (248-305)||(12427833-12427890)
chr7 (250-327)||(16830294-16830371)
chr7 (264-320)||(32047272-32047328)
[»] scaffold0528 (1 HSPs)
scaffold0528 (249-327)||(1895-1973)
[»] scaffold0154 (1 HSPs)
scaffold0154 (264-327)||(6220-6283)
[»] scaffold0137 (1 HSPs)
scaffold0137 (264-327)||(17116-17179)


Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 5162604 - 5163015
Alignment:
Q  18 ccattgaccctgcagcagccattgattctgtgacaggccctatgctagagtattattgaaaagatgaaaagaaaacgagcaaaaactgttttttactcga 117  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5162604 ccattgacccggcagcagccattgattctgtgacaggccctatgctagagtattattgaaaagatgaaaagaaaacgagcaaaaactgttttttactcga 5162703  T
Q  118 gagcatgctctgtcgatggaatcattcccttctagagagccttgtgtacaatactaactccaatgccattaatatttgcctttagttttcttttgtcatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5162704 gagcatgctctgtcgatggaatcattcccttctagagagccttgtgtacaatactaactccaatgccattaatatttgcctttagttttcttttgtcatt 5162803  T
Q  218 aattaattcttcaaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctc 317  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5162804 aattaattcttcaaccaccaaatcgggtcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctc 5162903  T
Q  318 aaaagtttctaaaccacattcctcgacatgtgacaaaaacataaagacaaggacctaattaacaaacttttaacaaagtgcttttgtaagtaattcatta 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5162904 aaaagtttctaaaccacattcctcgacatgtgacaaaaacataaagacaaggacctaattaacaaacttttaacaaagtgcttttgtaagtaattcatta 5163003  T
Q  418 tgagaccctatg 429  Q
    ||||||||||||    
T  5163004 tgagaccctatg 5163015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 5184436 - 5184838
Alignment:
Q  18 ccattgaccctgcagcagccattgattctgtgacaggccctatgctagagtattattgaaaagatgaaaagaaaacgagcaaaaactgttttttactcga 117  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5184436 ccattgacccggcagcagccattgattctgtgacaggccctatgctagagtattattgaaaagacgaaaagaaaacgagcaaaaactgttttttactcga 5184535  T
Q  118 gagcatgctctgtcgatggaatcattcccttctagagagccttgtgtacaatactaactccaatgccattaatatttgcctttagttttcttttgtcatt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5184536 gagcatgctctgtcgatggaatcattcccttctagagagccttgtgtacaatactaactccaatgccattaatatttgcctttagttttcttttgtcaat 5184635  T
Q  218 aattaattcttcaaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctc 317  Q
    || ||||||||||| |||||||||||| ||||||    |||| ||  ||||||||| || ||||||||||||||||||||||||| ||  | | ||| ||    
T  5184636 aa-taattcttcaagcaccaaatcggtccatgtc----taagcca--ctcaaattaatcactaactctattaatatttcaaattattcattttttttatc 5184728  T
Q  318 aaaagtttctaaaccacattcctcgacatgtgacaaaaacataaagacaaggacctaattaacaaacttttaacaaagtgcttttgtaagtaattcatta 417  Q
    |||||||||| ||||| || | ||||||||||||||||||||||||| ||||  |||||| |||||||||| || |||||||||||||||||||||||||    
T  5184729 aaaagtttctgaaccagatccttcgacatgtgacaaaaacataaagaaaaggttctaattgacaaacttttgactaagtgcttttgtaagtaattcatta 5184828  T
Q  418 tgagacccta 427  Q
    ||||||||||    
T  5184829 tgagacccta 5184838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 55264729 - 55264632
Alignment:
Q  230 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||||| | ||| |||||||||| |||| | |||||||||||||||| | |||||||||||||||||  ||||| ||||||| ||||||||||||    
T  55264729 aaccaccaatttggtccatgtctttacaagtgactctcaaattagtctctgaatctattaatatttcaaaagagtctgtgtctttgtcaaaagtttct 55264632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 394
Target Start/End: Original strand, 53924395 - 53924530
Alignment:
Q  256 taagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaa 355  Q
    |||||||  ||||||||||| | | ||||||||||||   |||| |||||  ||||||| |||||||||||| ||  || ||||||  ||||||||||||    
T  53924395 taagtcaccctcaaattagtatgtgactctattaata---caaactagtcattgtctttgtcaaaagtttctcaattacgttcctcaccatgtgacaaaa 53924491  T
Q  356 acataaagacaaggacctaattaacaaacttttaacaaa 394  Q
    |||||||||||| || |||||| | |||||||| |||||    
T  53924492 acataaagacaatgatctaattgaaaaacttttgacaaa 53924530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 230 - 325
Target Start/End: Original strand, 55264380 - 55264474
Alignment:
Q  230 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 325  Q
    ||||||||||| ||| | ||||||||||||||| | |||| |||||| || ||||||||||||||||||| |||||  ||||||| ||||||||||    
T  55264380 aaccaccaaattggt-cgtgtctttataagtcactttcaatttagtcactgactctattaatatttcaaaatagtcattgtctttgtcaaaagttt 55264474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 44137405 - 44137462
Alignment:
Q  264 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaa 321  Q
    |||||||||||||||| ||||||||||||||||||| |||| ||||||||| ||||||    
T  44137405 tctcaaattagtctctgactctattaatatttcaaaatagtatctgtctttgtcaaaa 44137462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 388
Target Start/End: Complemental strand, 54458826 - 54458706
Alignment:
Q  268 aaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaaacataaagacaa 367  Q
    |||||| |||| |||||||||||||||||||| || | ||||||||| |||||||| |||  |  |  | |||||  ||||||||||||||| |||||||    
T  54458826 aaattaatctcaaactctattaatatttcaaactaatatctgtctttgtcaaaagtgtctcgattaggtccctcgttatgtgacaaaaacattaagacaa 54458727  T
Q  368 ggacctaattaacaaactttt 388  Q
    ||| |||||| | ||||||||    
T  54458726 ggatctaattgagaaactttt 54458706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 325
Target Start/End: Original strand, 13302119 - 13302213
Alignment:
Q  230 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 325  Q
    ||||||||||| | | | ||||||| ||||||| ||||||||||||| ||   |||||||| |||||||| |||||||||||||| ||||||||||    
T  13302119 aaccaccaaattgatccctgtctttgtaagtcattctcaaattagtccctgcttctattaacatttcaaa-tagtctctgtctttttcaaaagttt 13302213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 395
Target Start/End: Complemental strand, 49448303 - 49448188
Alignment:
Q  280 aactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaaacataaagacaaggacctaattaa 379  Q
    |||| ||||||||||||||| |||||| ||||||| |||||||||| | ||  | ||  |||| ||| |||||||||||||||||||  || |||||| |    
T  49448303 aactatattaatatttcaaactagtctttgtctttgtcaaaagtttatcaattagatcgctcgtcatatgacaaaaacataaagacagtgatctaattga 49448204  T
Q  380 caaacttttaacaaag 395  Q
     |||||||| ||||||    
T  49448203 gaaacttttgacaaag 49448188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 325
Target Start/End: Complemental strand, 55284148 - 55284053
Alignment:
Q  230 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 325  Q
    |||||||||||  ||  |||| ||||||||||| | | |||||||||||||| ||||||||||||||||  |||| |||||||||  |||||||||    
T  55284148 aaccaccaaattagtctatgtttttataagtcattattaaattagtctctaattctattaatatttcaatctagtttctgtctttgccaaaagttt 55284053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 327
Target Start/End: Complemental strand, 33614447 - 33614384
Alignment:
Q  264 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    |||||||||||||  | ||| ||||||||||||||| ||||||||||||||  |||||||||||    
T  33614447 tctcaaattagtccatgactttattaatatttcaaactagtctctgtctttgacaaaagtttct 33614384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 395
Target Start/End: Original strand, 45921830 - 45921881
Alignment:
Q  344 catgtgacaaaaacataaagacaaggacctaattaacaaacttttaacaaag 395  Q
    |||||||||||||||||||||||| ||||||||| | |||||||| ||||||    
T  45921830 catgtgacaaaaacataaagacaatgacctaattgataaacttttgacaaag 45921881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 361
Target Start/End: Complemental strand, 54091106 - 54090992
Alignment:
Q  247 atgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacat 346  Q
    ||||| || ||||||| |||||||||||||  | |||| |||||||||| ||| |||| | ||||||| || ||||||||| ||  |  | ||||| |||    
T  54091106 atgtcgttgtaagtcattctcaaattagtcattgactcaattaatattttaaactagtatatgtctttgtccaaagtttctcaattaggtccctcgtcat 54091007  T
Q  347 gtgacaaaaacataa 361  Q
    |||||||||||||||    
T  54091006 gtgacaaaaacataa 54090992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 13119442 - 13119381
Alignment:
Q  266 tcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    |||||||||| | | ||||||||||||||||||| ||||| |||||||| | ||||||||||    
T  13119442 tcaaattagtttatgactctattaatatttcaaaatagtccctgtctttgttaaaagtttct 13119381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 13119191 - 13119270
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||| ||||| ||||||||||||||   | || |  ||||||||||||| ||||| |||||||| ||||||||||||    
T  13119191 tgtctttgtaagtgaatctcaaattagttcttcacgcatttaatatttcaaaatagtcgctgtctttgtcaaaagtttct 13119270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 327
Target Start/End: Complemental strand, 39051406 - 39051328
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||||||| ||| | | |||||||| | | ||||||||||||||| ||| ||||| |||||||| ||||||||||||    
T  39051406 tgtctttataaatcacttttaaattagt-tatgactctattaatattttaaaatagtcactgtctttgtcaaaagtttct 39051328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 40942734 - 40942675
Alignment:
Q  268 aaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    |||||||||| | ||| ||||||||||| |||||||||| ||| ||| ||||||||||||    
T  40942734 aaattagtctatgactatattaatattttaaattagtctttgtttttgtcaaaagtttct 40942675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 325
Target Start/End: Original strand, 7402978 - 7403036
Alignment:
Q  267 caaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 325  Q
    ||||||||| ||  ||||||||||||||| |||||||||||| ||||| ||||| ||||    
T  7402978 caaattagtttccgactctattaatattttaaattagtctctttctttatcaaatgttt 7403036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 325
Target Start/End: Complemental strand, 13432832 - 13432756
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 325  Q
    ||||||| ||||||| |||||||||||||| |   |||||||| |||| ||| ||||||||| |||| ||||||||||    
T  13432832 tgtctttgtaagtcattctcaaattagtctatgcttctattaacattttaaa-tagtctctgactttgtcaaaagttt 13432756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 310
Target Start/End: Original strand, 3465369 - 3465449
Alignment:
Q  230 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgt 310  Q
    ||||| |||||  |||||| ||||| ||| ||| ||| |||||||| | | ||| ||||||||||| ||||||||||||||    
T  3465369 aaccatcaaattcgttcatatctttgtaattcattcttaaattagtatatgactttattaatattttaaattagtctctgt 3465449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 247 - 394
Target Start/End: Original strand, 6511016 - 6511163
Alignment:
Q  247 atgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacat 346  Q
    |||||||||||||||| | |||||||||||| | | ||| ||||||||||||| |||||||  ||||| |||||| ||||| ||  | |||| ||  |||    
T  6511016 atgtctttataagtcattttcaaattagtctatgattctgttaatatttcaaaatagtctccatctttgtcaaaaatttctcaaatagattcttcatcat 6511115  T
Q  347 gtgacaaaaacataaagacaaggacctaattaacaaacttttaacaaa 394  Q
    |||||||||||||||||||| ||||| |||| | |||||||| |||||    
T  6511116 gtgacaaaaacataaagacatggaccaaattgagaaacttttgacaaa 6511163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 327
Target Start/End: Original strand, 22191386 - 22191461
Alignment:
Q  252 tttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||||||| | |||||||||||| |||||  |||||||||| ||| |||||| ||||||| ||||||||||||    
T  22191386 tttataagtcattttcaaattagtctataacttaattaatattttaaaatagtctttgtctttgtcaaaagtttct 22191461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 327
Target Start/End: Original strand, 17658774 - 17658855
Alignment:
Q  246 catgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||| ||| ||||||| | ||||||||||| | |||||||||||||||||||| |||||  ||||||| |||||| |||||    
T  17658774 catgtatttttaagtcactatcaaattagtccccaactctattaatatttcaaaatagtcattgtctttgtcaaaaatttct 17658855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 17672942 - 17673002
Alignment:
Q  246 catgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtct 306  Q
    ||||| ||| ||||||| ||||||||||||||| || ||||||||||||||||| ||||||    
T  17672942 catgtatttttaagtcactctcaaattagtctccaattctattaatatttcaaaatagtct 17673002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 22191590 - 22191527
Alignment:
Q  251 ctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtcttt 314  Q
    |||| ||||||| ||||||||||||| || ||||||||||||||| ||| |||||| |||||||    
T  22191590 ctttgtaagtcactctcaaattagtccctgactctattaatattttaaaatagtctatgtcttt 22191527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 395
Target Start/End: Complemental strand, 32502982 - 32502875
Alignment:
Q  288 taatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaaacataaagacaaggacctaattaacaaacttt 387  Q
    |||||||||||| |||||| ||||||| |||||| ||| | ||  | ||  |||| ||||||||||||||||| |||||| || |||||| | |||| ||    
T  32502982 taatatttcaaaatagtctttgtctttgtcaaaattttttcaattaaatgtctcgtcatgtgacaaaaacatagagacaatgatctaattgagaaacatt 32502883  T
Q  388 taacaaag 395  Q
    ||||||||    
T  32502882 taacaaag 32502875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 32014041 - 32013984
Alignment:
Q  264 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaa 321  Q
    |||||||||||||| | |||||||| |||||||||| ||||| |||||||| ||||||    
T  32014041 tctcaaattagtctatgactctattgatatttcaaaatagtcactgtctttgtcaaaa 32013984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 17627870 - 17627930
Alignment:
Q  246 catgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtct 306  Q
    ||||| ||| ||||||| | ||||||||||| | |||||||||||||||||||| ||||||    
T  17627870 catgtatttttaagtcactttcaaattagtcaccaactctattaatatttcaaaatagtct 17627930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 327
Target Start/End: Complemental strand, 33940100 - 33940037
Alignment:
Q  264 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    |||||||||||||  | ||| ||||||||||||||| ||||| |||| ||| ||||||||||||    
T  33940100 tctcaaattagtcgttgactttattaatatttcaaaatagtcactgtttttttcaaaagtttct 33940037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 327
Target Start/End: Original strand, 39760175 - 39760222
Alignment:
Q  280 aactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    |||||||||||||||||||| |||||| ||| ||| ||||||||||||    
T  39760175 aactctattaatatttcaaaatagtctatgtttttatcaaaagtttct 39760222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 17184764 - 17184834
Alignment:
Q  236 caaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtct 306  Q
    ||||| ||||||||||||| ||||  | | ||||| |||||||| ||||||||||||||| ||| ||||||    
T  17184764 caaattggttcatgtctttgtaagctattatcaaactagtctctgactctattaatattttaaactagtct 17184834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 35736709 - 35736778
Alignment:
Q  230 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaa 299  Q
    ||||||||||| ||| ||||||||| ||| ||| ||||||| ||||| || |||||| |||||| |||||    
T  35736709 aaccaccaaattggtccatgtctttgtaattcactctcaaactagtcactgactctactaatatctcaaa 35736778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 2451214 - 2451166
Alignment:
Q  256 taagtcaatctcaaattagtctctaactctattaatatttcaaattagt 304  Q
    ||||||| |||||||||||||| |||||||||||| |||  ||||||||    
T  2451214 taagtcattctcaaattagtctttaactctattaacattataaattagt 2451166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 388
Target Start/End: Complemental strand, 32503117 - 32502985
Alignment:
Q  256 taagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaa 355  Q
    ||||||| | |||||||||||||  |||||||| |||||| ||| |||||  ||||||| ||||||| |||| ||  |  | ||||| ||| ||| ||||    
T  32503117 taagtcattatcaaattagtctcacactctattgatattttaaaatagtcattgtctttgtcaaaagattctcaattaagtccctcgtcatatgataaaa 32503018  T
Q  356 acataaagacaaggacctaattaacaaactttt 388  Q
    ||||| |||||  || |||||| | ||||||||    
T  32503017 acatagagacagagatctaattgataaactttt 32502985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 325
Target Start/End: Complemental strand, 36184815 - 36184738
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 325  Q
    ||||||| ||| ||| |||||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||    
T  36184815 tgtctttgtaaatcactctcaaattagtctctaactctattagtatttcaaaatagtcactgtctttgtcaaaagttt 36184738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 31065847 - 31065925
Alignment:
Q  249 gtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    |||||||||||| |||| |  |||||||||||||||||||||||||||||| |||||  ||||||| ||||||||||||    
T  31065847 gtctttataagtgaatcactgattagtctctaactctattaatatttcaaaatagtcattgtctttgtcaaaagtttct 31065925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 325
Target Start/End: Complemental strand, 11275869 - 11275790
Alignment:
Q  246 catgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 325  Q
    ||||||||| ||| ||| |||||||||||||||| ||| ||||||||||| |||||||| ||| | ||| ||||||||||    
T  11275869 catgtctttgtaaatcattctcaaattagtctctgactttattaatattttaaattagtttctatatttgtcaaaagttt 11275790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 327
Target Start/End: Complemental strand, 33391593 - 33391514
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||| ||||||| | ||||||||||||| ||  |||||| ||||||||||||||| || ||||| ||||||||||||    
T  33391593 tgtctttgtaagtcattatcaaattagtctcaaaaactattagtatttcaaattagtccctatctttatcaaaagtttct 33391514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 20399100 - 20399019
Alignment:
Q  233 caccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtcttt 314  Q
    |||||||| ||| | | ||||| |||| || ||||||||||||| || |||||||||||||||||||||||||  |||||||    
T  20399100 caccaaattggtccctatctttgtaagacattctcaaattagtccctgactctattaatatttcaaattagtccttgtcttt 20399019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 31050968 - 31051046
Alignment:
Q  249 gtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    |||||||||||| | || | ||||||||||| |||||| |||||||||||| |||||   |||||| ||||||||||||    
T  31050968 gtctttataagtgattcactaattagtctctgactctactaatatttcaaaatagtcctcgtctttgtcaaaagtttct 31051046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 987373 - 987328
Alignment:
Q  256 taagtcaatctcaaattagtctctaactctattaatatttcaaatt 301  Q
    ||||||| |||||||||||||| ||||||||||||||||| |||||    
T  987373 taagtcactctcaaattagtctataactctattaatattttaaatt 987328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 325
Target Start/End: Complemental strand, 8840083 - 8840022
Alignment:
Q  264 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 325  Q
    ||||| ||||||| |  ||||||||||||||||||| ||||| |||||||| ||||||||||    
T  8840083 tctcagattagtccccgactctattaatatttcaaaatagtccctgtctttgtcaaaagttt 8840022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 325
Target Start/End: Complemental strand, 31046231 - 31046143
Alignment:
Q  236 caaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 325  Q
    ||||||||| ||||||||| ||||| | ||||||||||  |||  ||||||||||||||| ||| |||||| || |||| ||||||||||    
T  31046231 caaatcggt-catgtctttgtaagtgattctcaaattatcctccgactctattaatattttaaaatagtctatgcctttgtcaaaagttt 31046143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 327
Target Start/End: Complemental strand, 8285301 - 8285238
Alignment:
Q  264 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||||||||| || ||| ||||||||||| ||| |||||| | ||||| ||||||||||||    
T  8285301 tctcaaattagtccctgactatattaatattttaaaatagtctatatctttgtcaaaagtttct 8285238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 299
Target Start/End: Original strand, 36184524 - 36184567
Alignment:
Q  256 taagtcaatctcaaattagtctctaactctattaatatttcaaa 299  Q
    ||||||| |||||||||||||| ||||| |||||||||||||||    
T  36184524 taagtcactctcaaattagtctataactttattaatatttcaaa 36184567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 310
Target Start/End: Original strand, 27354306 - 27354351
Alignment:
Q  265 ctcaaattagtctctaactctattaatatttcaaattagtctctgt 310  Q
    |||||||||||| |||||| ||||||||||| ||| ||||||||||    
T  27354306 ctcaaattagtccctaactatattaatattttaaaatagtctctgt 27354351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 31066161 - 31066088
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaa 321  Q
    ||||||| ||||| | ||| ||||||| | |  ||||||||||||||| ||| |||||||||||||| ||||||    
T  31066161 tgtctttgtaagtgattcttaaattagcccccgactctattaatattttaaaatagtctctgtctttatcaaaa 31066088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 311
Target Start/End: Original strand, 9530547 - 9530610
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtc 311  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||    
T  9530547 tgtctttgtaagtcattctcaaattagtctctaactttattaatatttcaaactagtctctgtc 9530610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 19121854 - 19121936
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaa 330  Q
    ||||||| |||| || ||||||| ||||| |||||||||||||||||| ||| |||| ||| ||||| ||||||| |||||||    
T  19121854 tgtctttgtaagccactctcaaactagtcgctaactctattaatattttaaactagtttctatctttgtcaaaagcttctaaa 19121936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 21969143 - 21969222
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||||||||| | | ||||| ||||| || ||||||||||||||| ||| ||  |||||||||| ||||||||||||    
T  21969143 tgtctttataagtgattttcaaaatagtcactgactctattaatattttaaaataaactctgtctttatcaaaagtttct 21969222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 389
Target Start/End: Complemental strand, 3890080 - 3889971
Alignment:
Q  280 aactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaaacataaagacaaggacctaattaa 379  Q
    |||||||||||||||  ||| ||||   ||||||| |||||||||||| ||  |  | |||||   |||||||||||||| ||||||||||||||||| |    
T  3890080 aactctattaatattctaaactagttcatgtctttgtcaaaagtttctcaattaggtccctcgttgtgtgacaaaaacatgaagacaaggacctaattga 3889981  T
Q  380 caaactttta 389  Q
     |||||||||    
T  3889980 gaaactttta 3889971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 19122062 - 19121985
Alignment:
Q  250 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||| ||||||| | |||||||||||| | ||||||||||||||||||| |||| | ||||||| | | ||||||||    
T  19122062 tctttgtaagtcactttcaaattagtctatgactctattaatatttcaaactagtttatgtctttgttagaagtttct 19121985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 317
Target Start/End: Original strand, 21394254 - 21394323
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctc 317  Q
    ||||||| |||| || |||||||||||||  ||||||||||||||||| ||| |||||||| ||| ||||    
T  21394254 tgtctttgtaagccactctcaaattagtcattaactctattaatattttaaaatagtctctctctctctc 21394323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 302
Target Start/End: Original strand, 3889883 - 3889955
Alignment:
Q  230 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaatta 302  Q
    |||||||||||  |||||||||||| ||| ||| |||||||||||||    |||||||||| |||||||||||    
T  3889883 aaccaccaaattagttcatgtctttgtaattcattctcaaattagtcaaccactctattaagatttcaaatta 3889955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 30747944 - 30747996
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaat 300  Q
    ||||||| ||||||| |||||||||| |||||||||||||| |||||| ||||    
T  30747944 tgtctttctaagtcactctcaaattaatctctaactctattgatattttaaat 30747996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 327
Target Start/End: Complemental strand, 3960931 - 3960852
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||| ||||| | | ||||| |||||| | ||||||||||||||| |||||||||  ||| ||| ||||||||||||    
T  3960931 tgtctttgtaagttattatcaaactagtctatgactctattaatattttaaattagtccttgtgtttgtcaaaagtttct 3960852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 325
Target Start/End: Original strand, 8446945 - 8447020
Alignment:
Q  250 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 325  Q
    ||||||||||| | | ||||||||||| || | ||||||||||||||||| |||||  ||||||| | ||||||||    
T  8446945 tctttataagtgattttcaaattagtcactgattctattaatatttcaaaatagtcaatgtctttgttaaaagttt 8447020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 325
Target Start/End: Original strand, 8455749 - 8455824
Alignment:
Q  250 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 325  Q
    ||||||||||| | | ||||||||||| || | ||||||||||||||||| |||||  ||||||| | ||||||||    
T  8455749 tctttataagtgattttcaaattagtcactgattctattaatatttcaaaatagtcaatgtctttgttaaaagttt 8455824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 17333311 - 17333368
Alignment:
Q  265 ctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagt 323  Q
    |||||||||||| || ||||||||||||||||||| ||| ||| |||||| ||||||||    
T  17333311 ctcaaattagtccctgactctattaatatttcaaactagcctc-gtctttgtcaaaagt 17333368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 327
Target Start/End: Original strand, 17437558 - 17437604
Alignment:
Q  281 actctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||||||||| |||| ||||||| ||||||| ||||||||||||    
T  17437558 actctattaatatatcaatttagtctttgtctttatcaaaagtttct 17437604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 395
Target Start/End: Original strand, 17437695 - 17437745
Alignment:
Q  345 atgtgacaaaaacataaagacaaggacctaattaacaaacttttaacaaag 395  Q
    |||||||||||||||| |||||| || |||||| | |||||||||||||||    
T  17437695 atgtgacaaaaacatagagacaaagatctaattgagaaacttttaacaaag 17437745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 23765895 - 23765853
Alignment:
Q  344 catgtgacaaaaacataaagacaaggacctaattaacaaactt 386  Q
    |||||||||||||||||||||||| ||||||||| | ||||||    
T  23765895 catgtgacaaaaacataaagacaatgacctaattgaaaaactt 23765853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 21969351 - 21969306
Alignment:
Q  250 tctttataagtcaatctcaaattagtctctaactctattaatattt 295  Q
    ||||| ||||| |||||||||||||||||| |||| ||||||||||    
T  21969351 tctttgtaagtgaatctcaaattagtctctgactcaattaatattt 21969306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 24794227 - 24794190
Alignment:
Q  268 aaattagtctctaactctattaatatttcaaattagtc 305  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  24794227 aaattagtctctaactttattaatgtttcaaattagtc 24794190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 377
Target Start/End: Original strand, 15965646 - 15965738
Alignment:
Q  285 tattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaaacataaagacaaggacctaatt 377  Q
    ||||||||||| ||| |||||| | || || |||||||||| | ||  || | | ||| ||||||||||||||||||||||| | ||||||||    
T  15965646 tattaatattttaaactagtctatatccttgtcaaaagtttttcaattacgtccttcgtcatgtgacaaaaacataaagacatgaacctaatt 15965738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 327
Target Start/End: Complemental strand, 55447261 - 55447182
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||| ||||| | |||||||| ||||||| ||||| ||||||||| ||| |||||||||||||||||||||||||||    
T  55447261 tgtctttgtaagtgattctcaaatcagtctctgactctcttaatattttaaaatagtctctgtctttctcaaaagtttct 55447182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 39840659 - 39840738
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||| ||||| | |||||||||||||||| ||||||||||||||||||| |||||  ||| ||| ||||||||||||    
T  39840659 tgtctttgtaagtgattctcaaattagtctctgactctattaatatttcaaaatagtcattgtttttgtcaaaagtttct 39840738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 38181332 - 38181429
Alignment:
Q  230 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    |||||| |||| ||||||||||||||||||  | |||||||||  || |  ||||||||||||||||||| |||||||  ||||| ||||||||||||    
T  38181332 aaccactaaattggttcatgtctttataagctactctcaaatttatcacggactctattaatatttcaaactagtctccatctttatcaaaagtttct 38181429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 247 - 377
Target Start/End: Complemental strand, 33075349 - 33075219
Alignment:
Q  247 atgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacat 346  Q
    |||||||||||||||| |||||||||| ||  ||| ||||||||||||| |||||||||  ||| ||| |||||| ||| | ||  | ||  |||| ||     
T  33075349 atgtctttataagtcactctcaaattaatcattaaatctattaatattttaaattagtcattgtttttgtcaaaaatttatcaattatatctctcgtcac 33075250  T
Q  347 gtgacaaaaacataaagacaaggacctaatt 377  Q
     ||||||||| |||||||||| |||||||||    
T  33075249 atgacaaaaatataaagacaatgacctaatt 33075219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 247 - 304
Target Start/End: Original strand, 27812204 - 27812261
Alignment:
Q  247 atgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagt 304  Q
    |||||||| ||||||| ||| |||||||||||| | ||||||||||||||||||||||    
T  27812204 atgtctttgtaagtcattcttaaattagtctctgagtctattaatatttcaaattagt 27812261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 325
Target Start/End: Complemental strand, 20124322 - 20124246
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 325  Q
    ||||||| ||||||| | |||||||||||||| ||||||| ||||||||||| |||||  ||| ||| ||||||||||    
T  20124322 tgtctttgtaagtcatt-tcaaattagtctctgactctatcaatatttcaaaatagtcattgtttttgtcaaaagttt 20124246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 395
Target Start/End: Complemental strand, 29504963 - 29504832
Alignment:
Q  264 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaaacataaag 363  Q
    |||||||||||||   |||||||||||||||| ||| |||| | | ||||| | ||||||||||  |     | ||||| |||||||||||| |||||||    
T  29504963 tctcaaattagtcctcaactctattaatattttaaactagtttttatctttgttaaaagtttctcgatttggtccctcgtcatgtgacaaaagcataaag 29504864  T
Q  364 acaaggacctaattaacaaacttttaacaaag 395  Q
    |||  ||||||||| | |||||||||| ||||    
T  29504863 acattgacctaattgaaaaacttttaataaag 29504832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 45965875 - 45965804
Alignment:
Q  256 taagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||| |||||||||||| | | ||||||||||||||||||| ||||   | ||||| ||||||||||||    
T  45965875 taagtcactctcaaattagtttgtgactctattaatatttcaaactagttattatctttttcaaaagtttct 45965804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 327
Target Start/End: Complemental strand, 46164148 - 46164085
Alignment:
Q  264 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||||||||| || ||||||||||||  ||||| | |||||||||||| ||||| ||||||    
T  46164148 tctcaaattagtccctgactctattaataactcaaaatggtctctgtctttgtcaaacgtttct 46164085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 40472831 - 40472909
Alignment:
Q  249 gtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    |||||| ||||| | |||||||||||||| | |||||||||| |||| ||| |||| | | ||||| ||||||||||||    
T  40472831 gtctttgtaagttactctcaaattagtctttgactctattaaaattttaaactagtttatttctttgtcaaaagtttct 40472909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 40861029 - 40860967
Alignment:
Q  249 gtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtc 311  Q
    |||||| ||||||| ||| || ||||||||| | | |||||||||||||||||||||| ||||    
T  40861029 gtctttgtaagtcattcttaatttagtctctgattttattaatatttcaaattagtctttgtc 40860967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 31300428 - 31300371
Alignment:
Q  264 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaa 321  Q
    |||||||||||||| |||||||||| |||||| |||||| | | ||||||| ||||||    
T  31300428 tctcaaattagtctataactctatttatattttaaattaatttttgtctttgtcaaaa 31300371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 327
Target Start/End: Complemental strand, 39840969 - 39840892
Alignment:
Q  250 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||| ||||| | ||||||||||||  |||||| ||||||||||||||| ||||| || ||||| | |||| |||||    
T  39840969 tctttgtaagtgattctcaaattagttcctaactttattaatatttcaaaatagtccctatctttgttaaaattttct 39840892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 325
Target Start/End: Original strand, 42045771 - 42045848
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 325  Q
    ||||||| ||||| |  ||||||||| ||  ||||||||||||||||||||| |||||  ||||| | ||||||||||    
T  42045771 tgtctttgtaagtgatcctcaaattaatccataactctattaatatttcaaaatagtcattgtctatgtcaaaagttt 42045848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 1431532 - 1431476
Alignment:
Q  264 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaa 320  Q
    |||||||||||||   || ||||||||||| ||||||||||| |||||||| |||||    
T  1431532 tctcaaattagtcctcaattctattaatatctcaaattagtcactgtctttgtcaaa 1431476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 3910247 - 3910287
Alignment:
Q  264 tctcaaattagtctctaactctattaatatttcaaattagt 304  Q
    ||||||||||||| |||||||||||||||||| ||| ||||    
T  3910247 tctcaaattagtccctaactctattaatattttaaactagt 3910287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 48338613 - 48338573
Alignment:
Q  266 tcaaattagtctctaactctattaatatttcaaattagtct 306  Q
    |||||||||||||| ||||||||||||| ||||| ||||||    
T  48338613 tcaaattagtctctgactctattaatatatcaaaatagtct 48338573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 49782277 - 49782221
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagt 304  Q
    |||||||||||||   | |||||||||||  ||||||||||||||||||||| ||||    
T  49782277 tgtctttataagtgtttttcaaattagtccataactctattaatatttcaaaatagt 49782221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 248 - 321
Target Start/End: Original strand, 28504711 - 28504784
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaa 321  Q
    ||||||| ||||||| |||||||||||||| | ||||||||||||||||||| |||||||||| ||| ||||||    
T  28504711 tgtctttgtaagtcattctcaaattagtctatgactctattaatatttcaaactagtctctgtttttgtcaaaa 28504784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 230 - 324
Target Start/End: Complemental strand, 46410920 - 46410826
Alignment:
Q  230 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtt 324  Q
    ||||||||||| |||   ||||||| ||||| | |||||| ||||||| | |||||| |||||||||||| |||||||||||||| |||||||||    
T  46410920 aaccaccaaattggtcattgtctttgtaagtgattctcaatttagtctatgactctaataatatttcaaaatagtctctgtctttatcaaaagtt 46410826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 327
Target Start/End: Complemental strand, 10595581 - 10595501
Alignment:
Q  247 atgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    |||||||| |||| || | |||||||| ||  |||||||||||||||||||||||||||  ||||||| ||||||||||||    
T  10595581 atgtctttgtaagacattgtcaaattaatccataactctattaatatttcaaattagtcattgtctttgtcaaaagtttct 10595501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 395
Target Start/End: Original strand, 6219625 - 6219772
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatg 347  Q
    ||||||||||||||| ||| ||| |||||| | | | ||||||||||| ||||||||| |||||||| |||||| ||||| ||  |  | ||||   |||    
T  6219625 tgtctttataagtcattcttaaactagtctatgattttattaatattttaaattagtcactgtctttgtcaaaaatttctcaattaggtccctcattatg 6219724  T
Q  348 tgacaaaaacataaagacaaggacctaattaacaaacttttaacaaag 395  Q
    ||||||||||||||||||   ||||||||| | | |||||| ||||||    
T  6219725 tgacaaaaacataaagacggtgacctaattgagatacttttgacaaag 6219772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 7790481 - 7790411
Alignment:
Q  256 taagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||| |||||||||||| | | |||||||||||||||||||||||| ||| ||||| ||||||||||||    
T  7790481 taagtcattctcaaattagt-tatgactctattaatatttcaaattagtttctatctttatcaaaagtttct 7790411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 8792967 - 8793018
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaa 299  Q
    ||||||| ||||||| ||||||||||||||| ||||||||||||||||||||    
T  8792967 tgtctttgtaagtcactctcaaattagtctccaactctattaatatttcaaa 8793018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 10377643 - 10377568
Alignment:
Q  230 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtc 305  Q
    ||||||||| | ||| | ||||||| ||||||| | |||||||||||| | |||||||||||||||||||||||||    
T  10377643 aaccaccaagttggtccctgtctttgtaagtcattatcaaattagtctttgactctattaatatttcaaattagtc 10377568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 6219847 - 6219766
Alignment:
Q  230 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtc 311  Q
    |||||| |||| | ||||||||||| |||| || ||||||||  |||||||||||||||||||||| ||| |||||| ||||    
T  6219847 aaccactaaattgcttcatgtctttgtaagccattctcaaatctgtctctaactctattaatattttaaactagtctttgtc 6219766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 27293283 - 27293336
Alignment:
Q  251 ctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagt 304  Q
    |||| ||| ||| |||||||||||||||| ||||||||||||||||||||||||    
T  27293283 ctttgtaaatcattctcaaattagtctctgactctattaatatttcaaattagt 27293336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 27562671 - 27562748
Alignment:
Q  250 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||| || |||| |||| |||||| |  |||||||||||||||||||||||| | ||||||||| ||||||||||||    
T  27562671 tctttgtatgtcattctcgaattagaccataactctattaatatttcaaattaatttctgtctttgtcaaaagtttct 27562748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 38576576 - 38576648
Alignment:
Q  250 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaag 322  Q
    ||||| ||| ||| |||||||||||||| | | |||||||||||||||||  ||||||||||||| |||||||    
T  38576576 tctttgtaaatcattctcaaattagtctttgattctattaatatttcaaaccagtctctgtctttatcaaaag 38576648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 327
Target Start/End: Original strand, 23399510 - 23399607
Alignment:
Q  233 caccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaa---tatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    |||||| | ||| ||||||||| ||||| ||| |||||||||||  ||||||||||||   |||||||||||||||  ||| ||| ||||||||||||    
T  23399510 caccaatttggtgcatgtctttctaagttaatatcaaattagtccttaactctattaatactatttcaaattagtcattgtttttgtcaaaagtttct 23399607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 15395209 - 15395259
Alignment:
Q  264 tctcaaattagtctctaactctattaatatttcaaattagtctctgtcttt 314  Q
    |||||||||||||| | ||||||||||||||| ||| ||||||||||||||    
T  15395209 tctcaaattagtctatgactctattaatattttaaaatagtctctgtcttt 15395259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 38783894 - 38783971
Alignment:
Q  250 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||| ||||||| | |||||||||||  | ||||||||||||||| ||| |||||  ||||||| ||||||||||||    
T  38783894 tctttgtaagtcactttcaaattagtccatgactctattaatattttaaaatagtcattgtctttgtcaaaagtttct 38783971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 34835619 - 34835667
Alignment:
Q  279 taactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||| ||| ||||||||||| |||||||||||||| ||||||||||||    
T  34835619 taactttatcaatatttcaaactagtctctgtctttgtcaaaagtttct 34835667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 40650104 - 40650039
Alignment:
Q  233 caccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaa 299  Q
    |||||| | ||| ||||||||| ||||| | ||||||||||||| ||||||| ||||||||||||||    
T  40650104 caccaatttggtccatgtctttgtaagtgattctcaaattagtc-ctaactccattaatatttcaaa 40650039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Original strand, 4066923 - 4066984
Alignment:
Q  266 tcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||| ||| || |||||||||||| |||||| | ||| |||||||| ||||||||||||    
T  4066923 tcaaattggtccctgactctattaataattcaaaatggtcactgtctttgtcaaaagtttct 4066984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 313
Target Start/End: Complemental strand, 27293503 - 27293426
Alignment:
Q  236 caaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctt 313  Q
    ||||| |||| || ||||| ||||||| ||| |||||||||| | ||| ||||||||||||||| ||| | |||||||    
T  27293503 caaattggtttatatctttgtaagtcattcttaaattagtctatgactttattaatatttcaaactagcccctgtctt 27293426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Complemental strand, 34835777 - 34835740
Alignment:
Q  268 aaattagtctctaactctattaatatttcaaattagtc 305  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  34835777 aaattagtttctaactctattaatattttaaattagtc 34835740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 27293394 - 27293350
Alignment:
Q  344 catgtgacaaaaacataaagacaaggacctaattaacaaactttt 388  Q
    ||||| |||||||||||||||||| ||||||||| | ||||||||    
T  27293394 catgttacaaaaacataaagacaaagacctaattgagaaactttt 27293350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 46410682 - 46410722
Alignment:
Q  285 tattaatatttcaaattagtctctgtctttctcaaaagttt 325  Q
    ||||||||||||||| ||||||| |||||| ||||||||||    
T  46410682 tattaatatttcaaaatagtctcagtctttgtcaaaagttt 46410722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 122604 - 122547
Alignment:
Q  264 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaa 321  Q
    |||||||||||||||| ||||||||||||||||||| |||||| ||||||| ||||||    
T  122604 tctcaaattagtctctgactctattaatatttcaaactagtctttgtctttgtcaaaa 122547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 10028633 - 10028730
Alignment:
Q  230 aaccaccaaatcggttcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||||||| | |  |||| ||| ||||||| ||||||||||||| || |||||||||||||||||||||||||| | || ||  |||||||||||    
T  10028633 aaccaccaaattgatcaatgtatttgtaagtcattctcaaattagtcactgactctattaatatttcaaattagtctttatccttgccaaaagtttct 10028730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 327
Target Start/End: Original strand, 10028741 - 10028822
Alignment:
Q  246 catgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||| ||| ||||||| ||||||||||||| |  |||||||||||||||||||| ||||||| |||||  |||||||||||    
T  10028741 catgtatttgtaagtcattctcaaattagtcaccgactctattaatatttcaaatcagtctctatctttgccaaaagtttct 10028822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 394
Target Start/End: Original strand, 33229497 - 33229635
Alignment:
Q  250 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtg 349  Q
    ||||| ||||||  ||||||||||||| | ||| |||||||||||||||| |||||| ||||      |||||||||| ||  |  | ||||| ||||||    
T  33229497 tctttgtaagtcgctctcaaattagtccccaaccctattaatatttcaaactagtctttgtc------aaaagtttctcaattaggtccctcgtcatgtg 33229590  T
Q  350 acaaaaacataaagacaaggacctaattaacaaacttttaacaaa 394  Q
    ||||||||||||||||| ||| |||||| | |||||||| |||||    
T  33229591 acaaaaacataaagacagggatctaattgagaaacttttgacaaa 33229635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 325
Target Start/End: Original strand, 21136587 - 21136664
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 325  Q
    |||||||  |||||| |||||||||||||| | ||||||||||||||||||| |||||  | ||||| ||||||||||    
T  21136587 tgtcttttaaagtcattctcaaattagtctttgactctattaatatttcaaaatagtccttatctttgtcaaaagttt 21136664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 325
Target Start/End: Complemental strand, 10028953 - 10028876
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 325  Q
    ||||||| || |||| |||||||||||||| | ||| ||||||||||||||| |||||  ||||||| ||||| ||||    
T  10028953 tgtctttgtaggtcactctcaaattagtctttgactttattaatatttcaaactagtcgttgtctttttcaaaggttt 10028876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 326
Target Start/End: Complemental strand, 23961725 - 23961644
Alignment:
Q  245 tcatgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttc 326  Q
    |||||||||| ||||||| | |||||| ||||||| | || |||||||||||||| ||||| ||  |||| |||||||||||    
T  23961725 tcatgtctttgtaagtcattttcaaatcagtctctgattcaattaatatttcaaaatagtccctaactttatcaaaagtttc 23961644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 41687901 - 41687849
Alignment:
Q  252 tttataagtcaatctcaaattagtctctaactctattaatatttcaaattagt 304  Q
    ||||||||||| |||||||||||| | | ||||||||||||||||||| ||||    
T  41687901 tttataagtcactctcaaattagtttgtgactctattaatatttcaaactagt 41687849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 306
Target Start/End: Original strand, 5840352 - 5840411
Alignment:
Q  247 atgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtct 306  Q
    |||||||| ||||| | |||||||||||||||| | ||||||||||||| ||| ||||||    
T  5840352 atgtctttgtaagttactctcaaattagtctctgattctattaatattttaaaatagtct 5840411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 23768775 - 23768825
Alignment:
Q  264 tctcaaattagtctctaactctattaatatttcaaattagtctctgtcttt 314  Q
    |||||||||||||| ||| | ||||||||||| ||| ||||||||||||||    
T  23768775 tctcaaattagtctataattttattaatattttaaaatagtctctgtcttt 23768825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 10028854 - 10028813
Alignment:
Q  347 gtgacaaaaacataaagacaaggacctaattaacaaactttt 388  Q
    |||||||||||||||||||| |||||||||| | ||||||||    
T  10028854 gtgacaaaaacataaagacatggacctaattgagaaactttt 10028813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 395
Target Start/End: Complemental strand, 5846999 - 5846951
Alignment:
Q  347 gtgacaaaaacataaagacaaggacctaattaacaaacttttaacaaag 395  Q
    |||||||||||||| |||||| ||||||||| | ||||||| |||||||    
T  5846999 gtgacaaaaacatagagacaatgacctaattgaaaaactttaaacaaag 5846951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 36478611 - 36478557
Alignment:
Q  250 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagt 304  Q
    |||||||||||||||||||||||||| | ||||| ||| ||||||||||||||||    
T  36478611 tctttataagtcaatctcaaattagtttataactttatcaatatttcaaattagt 36478557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 325
Target Start/End: Complemental strand, 21249057 - 21248998
Alignment:
Q  266 tcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 325  Q
    |||||||||| ||||||| ||||||||||| |||||||||||  ||||| ||||||||||    
T  21249057 tcaaattagtttctaactttattaatattttaaattagtctccatctttgtcaaaagttt 21248998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 41008993 - 41008922
Alignment:
Q  256 taagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||| | |||||||| ||||| ||||||||||||||| ||| |||||||| ||||| | ||||||||||    
T  41008993 taagtcattttcaaattaatctctgactctattaatattttaaaatagtctctatctttgttaaaagtttct 41008922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 42709917 - 42709996
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||| ||||| | |||||||| ||||||  ||||||||||||||| ||| |||||  ||||||| ||||||||||||    
T  42709917 tgtctttgtaagtgattctcaaatcagtctccgactctattaatattttaaaatagtcaatgtctttgtcaaaagtttct 42709996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 394
Target Start/End: Complemental strand, 10525114 - 10524976
Alignment:
Q  250 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtg 349  Q
    ||||| ||||||| ||||||||| ||| |  || |||||||||||||||| |||||| ||||      |||||||||| ||  |  | ||||| ||||||    
T  10525114 tctttgtaagtcactctcaaatttgtccccgaccctattaatatttcaaactagtctttgtc------aaaagtttctcaattaggtccctcgtcatgtg 10525021  T
Q  350 acaaaaacataaagacaaggacctaattaacaaacttttaacaaa 394  Q
    ||||||||||||||| | ||| |||||| | |||||||| |||||    
T  10525020 acaaaaacataaagatagggatctaattgagaaacttttgacaaa 10524976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 395
Target Start/End: Complemental strand, 30935416 - 30935271
Alignment:
Q  250 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtg 349  Q
    ||||| ||||||| |||||||||||||||  ||| ||||||||||||||| || || || ||||| ||||||     | ||  |  | ||||| ||||||    
T  30935416 tctttgtaagtcactctcaaattagtctccgactttattaatatttcaaactaatccctatctttgtcaaaaaaaattcaattaggtccctcgtcatgtg 30935317  T
Q  350 acaaaaacataaagacaaggacctaattaacaaacttttaacaaag 395  Q
    ||||||||||||||| ||||| |||| | | |||||||| ||||||    
T  30935316 acaaaaacataaagataaggatctaagtgaaaaacttttgacaaag 30935271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 327
Target Start/End: Complemental strand, 6086 - 6026
Alignment:
Q  267 caaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||||||| | ||| | |||||||||||||||||||| ||||||| ||||| ||||||    
T  6086 caaattagtctttgactttgttaatatttcaaattagtctttgtctttatcaaacgtttct 6026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 320
Target Start/End: Complemental strand, 3248532 - 3248445
Alignment:
Q  233 caccaaatcggttcatgtctttataagtcaa-tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaa 320  Q
    |||||||| ||| | ||||||||||| |||| ||| |||||||||| | ||| ||||||||| ||||| |||||||||||||| |||||    
T  3248532 caccaaattggtccctgtctttataa-tcaactcttaaattagtctttgactatattaatatgtcaaaatagtctctgtctttgtcaaa 3248445  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 327
Target Start/End: Original strand, 3248336 - 3248399
Alignment:
Q  264 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    |||||||||||| ||| ||| ||||||||| ||||| |||| ||||||||| ||||| ||||||    
T  3248336 tctcaaattagtatctgactttattaatatctcaaaatagtttctgtctttgtcaaatgtttct 3248399  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 325
Target Start/End: Complemental strand, 26752084 - 26752017
Alignment:
Q  258 agtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagttt 325  Q
    ||||| |||||||||||||||| ||| | ||| ||||| ||| |||||| ||||||| ||||||||||    
T  26752084 agtcactctcaaattagtctctgactttgttattattttaaaatagtctttgtctttgtcaaaagttt 26752017  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 375
Target Start/End: Complemental strand, 12428006 - 12427916
Alignment:
Q  285 tattaatatttcaaattagtctctgtctttctcaaaagtttctaaaccacattcctcgacatgtgacaaaaacataaagacaaggacctaa 375  Q
    ||||||||||||||| |||||  ||||||| |||||||||| | ||     |  |||| |||||||||||||||||||||||| |||||||    
T  12428006 tattaatatttcaaactagtccatgtctttgtcaaaagtttttcaatttggtctctcgtcatgtgacaaaaacataaagacaatgacctaa 12427916  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 12427833 - 12427890
Alignment:
Q  248 tgtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtc 305  Q
    ||||||| ||||||| ||||||||||||   | ||||||||||||||| |||||||||    
T  12427833 tgtctttgtaagtcattctcaaattagttcatgactctattaatattttaaattagtc 12427890  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 327
Target Start/End: Original strand, 16830294 - 16830371
Alignment:
Q  250 tctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||| ||||||| |||||||||||| || || |||||||||||| |||| ||||   ||||||| ||| ||||||||    
T  16830294 tctttgtaagtcactctcaaattagtgtcaaattctattaatattccaaactagtgcatgtctttgtcataagtttct 16830371  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 32047272 - 32047328
Alignment:
Q  264 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaa 320  Q
    ||||||||| |||||| ||||||||||||  ||||| | |||||||||||| |||||    
T  32047272 tctcaaattggtctctgactctattaataactcaaaatggtctctgtctttgtcaaa 32047328  T

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Target: scaffold0528 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 1973 - 1895
Alignment:
Q  249 gtctttataagtcaatctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    |||||||||||| | || | ||||||||||| |||||| |||||||||||| |||||   |||||| ||||||||||||    
T  1973 gtctttataagtgattcactaattagtctctgactctactaatatttcaaaatagtcctcgtctttgtcaaaagtttct 1895  T

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Target: scaffold0154 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 327
Target Start/End: Complemental strand, 6283 - 6220
Alignment:
Q  264 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    |||||||||||||| | ||||||||||||||||||| |||| | || |||| | ||||||||||    
T  6283 tctcaaattagtctttgactctattaatatttcaaaatagtttttgcctttgttaaaagtttct 6220  T

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Target: scaffold0137 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 327
Target Start/End: Original strand, 17116 - 17179
Alignment:
Q  264 tctcaaattagtctctaactctattaatatttcaaattagtctctgtctttctcaaaagtttct 327  Q
    ||||||||||||| | |||||||||||||||| ||| ||||  |||||||| ||||| ||||||    
T  17116 tctcaaattagtcccaaactctattaatattttaaactagttcctgtctttgtcaaacgtttct 17179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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